RNA id: TCONS_00001123


Basic Information

Item Value
RNA id TCONS_00001123
length 1294
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_000659
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51827046 ~ 51829291 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGAAACCTTGAACCGCAAGATTTTTCAACAAATAATCGACTATATGTATTTTTAGAGAGAAATAAAttccctctctttttttttttgtaaaattctaTAATTTAGCTAAAATGACTTTTCAGGTCGGCTTTTTTGTGCTGTTGTCAGTCACAACAATTGGCGCTTTCCCGCGCAATGCATTTCAGCGGGAATTTCACCGACACGTGGCGAAAGACTTTGAATCCTCCGGGAATGGACCAGACGAACCTGTTCGGGGATCTGTCCGAATTGTCAAACTAAACCCTCATTTTCTGCGCCGGGCCGCCGTTAGTCATGTGCCGTTCAGAAATTCACCAAGTCGAGGCGCGTTTCCCGCGTTCTTGGCCCTCGGACGTCCGGGCCCCGCAATCCTGACCCATAGCAAACCTGCGCCTCAGGTGAGCAGCAGTGCAGACAGGAGGAAACAAGGGCTCGAGATGTGGAAGAAAGTGGTGCACAAAAGCGAGCGAAAAAAAGAGGCAGTGGCTCTGCGCATCAATCCCAAAGACATGAACAAACAGAGCTGTGCCGCAGTTCCCTTTACACAGCGCATAACGGAGGAGGGCTGTGAGACGGTGACCGTTCACAATAATCTCTGCTACGGTCAGTGCAGCTCCATGTTCGTGCCCTCCAGCGGAGGCTCTCACGGACAACAGAAAGCGCAGTGCACGCGCTGCGGCCCCTCTAGAGCGCGCTCCGTGCTCCTGCACCTGCGCTGCGGGTCTGAGGTGCGGGAGAGGCGCGTCCTGATCGTTGAGGAGTGCAAGTGTGAAACCAGCAGCGAAGAGGCCAAAGTTCAGAACACAGATATGTTTAATTTATAACAGTCATTTTAAAGTTTATAAAAATCGTAAAGGCATTGCTAATATTTAACTCCAGAATTATTTAAAGCAAAAACGCACATCAGTGGAAAAGTTCTCAACCAGGGCGCGtgacaataatatataataaagtgATAAGAGGAGcctcttaaacattaaaataaagtcgGCACACCTCAGCCCCTCTCTGCATCTCTACAATATTTTAATTACGACCTTTCTGTGCAGAAGTTagtagttatttaagttcaataatgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactaataGCCACATCTAATGGCTAAAGCATTTGTTCGTTTTATGTAAGTGGCCGAAATATTAATTGGTTAAGACTGTGTTAAACGAGTCCCTGCAAACAGGAAACGTTTCTATAAATTGCCGTCTGAAA

Function

GO:

id name namespace
GO:0061372 activin receptor signaling pathway involved in heart jogging biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0010084 specification of animal organ axis polarity biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0003146 heart jogging biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005576 extracellular region cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040421-2 Acts upstream of or within several processes, including determination of left/right symmetry; formation of primary germ layer; and specification of animal organ axis polarity. Predicted to be located in extracellular region. Is expressed in Kupffer's vesicle; forerunner cell group; mesoderm; and tail bud. Orthologous to human DAND5 (DAN domain BMP antagonist family member 5).

Ensembl:

ensembl_id ENSDART00000052992

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003161 lncRNA upstream 1026 51752978 ~ 51826020 (+) False XLOC_000658
TCONS_00001121 lncRNA upstream 1026 51753125 ~ 51826020 (+) False XLOC_000658
TCONS_00001122 lncRNA upstream 1026 51823724 ~ 51826020 (+) False XLOC_000658
TCONS_00003162 lncRNA upstream 1026 51823736 ~ 51826020 (+) False XLOC_000658
TCONS_00003163 lncRNA upstream 1026 51823739 ~ 51826020 (+) False XLOC_000658
TCONS_00003165 lncRNA downstream 21270 51850561 ~ 51864765 (+) True XLOC_000660
TCONS_00003166 lncRNA downstream 516664 52345955 ~ 52346899 (+) True XLOC_000665
TCONS_00001133 lncRNA downstream 523871 52353162 ~ 52363107 (+) True XLOC_000666
TCONS_00003167 lncRNA downstream 534111 52363402 ~ 52368198 (+) True XLOC_000667
TCONS_00002875 lncRNA downstream 535739 52365030 ~ 52367577 (+) True XLOC_000668
TCONS_00001120 mRNA upstream 97184 51721851 ~ 51729862 (+) True XLOC_000657
TCONS_00001118 mRNA upstream 199917 51615672 ~ 51627129 (+) True XLOC_000654
TCONS_00001117 mRNA upstream 210941 51615506 ~ 51616105 (+) False XLOC_000654
TCONS_00001116 mRNA upstream 281129 51537250 ~ 51545917 (+) True XLOC_000653
TCONS_00001115 mRNA upstream 301960 51496862 ~ 51525086 (+) True XLOC_000652
TCONS_00001124 mRNA downstream 66856 51896147 ~ 52086496 (+) False XLOC_000661
TCONS_00001125 mRNA downstream 74122 51903413 ~ 51961732 (+) True XLOC_000661
TCONS_00001127 mRNA downstream 300922 52130213 ~ 52137313 (+) True XLOC_000662
TCONS_00001128 mRNA downstream 308237 52137528 ~ 52152993 (+) False XLOC_000663
TCONS_00001129 mRNA downstream 308290 52137581 ~ 52150510 (+) True XLOC_000663
TCONS_00001119 other upstream 143428 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001111 other upstream 361464 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001097 other upstream 753939 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001084 other upstream 972568 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001079 other upstream 1695037 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001126 other downstream 300873 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001154 other downstream 1170541 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001160 other downstream 1535219 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001166 other downstream 1558474 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001180 other downstream 2223813 54053104 ~ 54061210 (+) True XLOC_000705

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000301_01574554_01576811.mRNA True 1490 mRNA 0.47 2 CI01000301 1574410 ~ 1577404 (+)