RNA id: TCONS_00001118


Basic Information

Item Value
RNA id TCONS_00001118
length 640
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_000654
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51615506 ~ 51627129 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCTCGTacgaaaaataattattattcaaattgTACTACATTCTGGCGTGATCACAGTGTTTCTTTCGCGTTTTCTGTACTAATGAAGCAGCGATCAGTTTGCTTGCTGTTTGTAACACACTAACGCATTCATCTTAGCCGTCTAAATCAGCAATCATGCCAGGCTTTGAGCTGGAGCAGGTGGACGGTGGCAGTCCTGTGGATCTGCCCTATGGAGAGACTGTCCTGGGCAGAGGGCCATTTCTAGGGGTGAACGATAAGAGGGTTTCCAGGAACCATGGCATCCTTGAGAACCAGAATGGCGTGCTGCGCCTGAAGCCTACGCATCTGAACCCTTGTTTTATTCAGACGAACATCGTAGCGCCGCCTCAGCCGCTGGAGAAGGACCAGTGGCACTGCCTGAAGGATGGAGACATCTTCTCTCTCATGCCTGGAAAATACATTTACAGAGTCCACATTAAAGAAGACGATCAGACTCCCAGGAACAGTCAGGCGTTTGGAGAGGATGTGGAGGTGGAGAAGTGTTTGTCTGAAGACACACTCGAGGCCAGCAGCTGCACACACTCCAACCtgagacacacacatgcagaagATGAAGGAGCCGCTGGTTCTTCACACACTCTTGCCTCTCTAAATGAG

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0035861 site of double-strand break cellular_component
GO:0005634 nucleus cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDART00000165117

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001114 lncRNA upstream 134650 51479146 ~ 51481022 (+) False XLOC_000652
TCONS_00001098 lncRNA upstream 542544 51066816 ~ 51073128 (+) True XLOC_000645
TCONS_00001095 lncRNA upstream 573340 51039558 ~ 51042332 (+) True XLOC_000644
TCONS_00003160 lncRNA upstream 597121 51015858 ~ 51018551 (+) True XLOC_000643
TCONS_00001091 lncRNA upstream 631733 50977554 ~ 50983939 (+) False XLOC_000641
TCONS_00002874 lncRNA downstream 67622 51694751 ~ 51717215 (+) True XLOC_000656
TCONS_00003161 lncRNA downstream 125849 51752978 ~ 51826020 (+) False XLOC_000658
TCONS_00001121 lncRNA downstream 125996 51753125 ~ 51826020 (+) False XLOC_000658
TCONS_00001122 lncRNA downstream 196595 51823724 ~ 51826020 (+) False XLOC_000658
TCONS_00003162 lncRNA downstream 196607 51823736 ~ 51826020 (+) False XLOC_000658
TCONS_00001116 mRNA upstream 69755 51537250 ~ 51545917 (+) True XLOC_000653
TCONS_00001115 mRNA upstream 90586 51496862 ~ 51525086 (+) True XLOC_000652
TCONS_00001113 mRNA upstream 90588 51479128 ~ 51525084 (+) False XLOC_000652
TCONS_00001112 mRNA upstream 132917 51475094 ~ 51482755 (+) False XLOC_000652
TCONS_00001110 mRNA upstream 187566 51407520 ~ 51428106 (+) True XLOC_000650
TCONS_00001120 mRNA downstream 94722 51721851 ~ 51729862 (+) True XLOC_000657
TCONS_00001123 mRNA downstream 199917 51827046 ~ 51829291 (+) True XLOC_000659
TCONS_00001124 mRNA downstream 269018 51896147 ~ 52086496 (+) False XLOC_000661
TCONS_00001125 mRNA downstream 276284 51903413 ~ 51961732 (+) True XLOC_000661
TCONS_00001127 mRNA downstream 503084 52130213 ~ 52137313 (+) True XLOC_000662
TCONS_00001111 other upstream 150090 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001097 other upstream 542565 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001084 other upstream 761194 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001079 other upstream 1483663 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001068 other upstream 1899850 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001119 other downstream 56390 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001126 other downstream 503035 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001154 other downstream 1372703 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001160 other downstream 1737381 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001166 other downstream 1760636 53387765 ~ 53387881 (+) True XLOC_000690

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000301_01438533_01439245.mRNA True 961 mRNA 0.41 2 CI01000301 1437954 ~ 1439375 (+)