RNA id: TCONS_00003162


Basic Information

Item Value
RNA id TCONS_00003162
length 704
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id XLOC_000658
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51752978 ~ 51826020 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGgtgacacacacataaacagacacGTCTTTTACCCTGTCAATACGAGTTAATGTGTTCAGAACACTAGAGAAGAGAGCAGTGTGGCCAATGGCTCCACCTCGAGGCGTTTTTCAGTAACTGCAAAAAAGAGTAGGCAATGCCGTCCAAAATGAGTTCAAGGAAACTCGATTCCCAGAGGCCAATTTTGGATGTCAGCAGGCATCGCATGGACGAAGGTGCATGGCACAGTATGATAACAGCCTTCAAGCAGATGTCAGAGAATGAAGTGAGAGGATCCAGTCAGCCCCAGTCCTTCCTGGCTCAACAGAGGCAGTCTGCTACACTCAGAAGGGTCCAAACTAATATAAAACGATGAATTTGCTCATAATCTCGAGTCTGTACATAGCGCCTTGGTGAGACACGAGCTCCACCTGCTGGTTTCTGAATGTATTTGCATGCACATATTAGTTTTATCctgtagtatttttattaaaagccGTCGatgcaaaaatatttgtttatttgggttttgtgttctttttatatacagtttttgtaatttattaaattttatttattgtatttgtaattaattatttgatttattaaatatagCCTAAACAAAAACAAGACCTCGGGATCACTTGTTTACTCGTATCTTCTTATTTTACATACCCCAAATTCAGTAAATGTGAGTAAATAAAACTGAAGTTTTGCCAAACA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002874 lncRNA upstream 106521 51694751 ~ 51717215 (+) True XLOC_000656
TCONS_00001114 lncRNA upstream 342714 51479146 ~ 51481022 (+) False XLOC_000652
TCONS_00001098 lncRNA upstream 750608 51066816 ~ 51073128 (+) True XLOC_000645
TCONS_00001095 lncRNA upstream 781404 51039558 ~ 51042332 (+) True XLOC_000644
TCONS_00003160 lncRNA upstream 805185 51015858 ~ 51018551 (+) True XLOC_000643
TCONS_00003165 lncRNA downstream 24541 51850561 ~ 51864765 (+) True XLOC_000660
TCONS_00003166 lncRNA downstream 519935 52345955 ~ 52346899 (+) True XLOC_000665
TCONS_00001133 lncRNA downstream 527142 52353162 ~ 52363107 (+) True XLOC_000666
TCONS_00003167 lncRNA downstream 537382 52363402 ~ 52368198 (+) True XLOC_000667
TCONS_00002875 lncRNA downstream 539010 52365030 ~ 52367577 (+) True XLOC_000668
TCONS_00001120 mRNA upstream 93874 51721851 ~ 51729862 (+) True XLOC_000657
TCONS_00001118 mRNA upstream 196607 51615672 ~ 51627129 (+) True XLOC_000654
TCONS_00001117 mRNA upstream 207631 51615506 ~ 51616105 (+) False XLOC_000654
TCONS_00001116 mRNA upstream 277819 51537250 ~ 51545917 (+) True XLOC_000653
TCONS_00001115 mRNA upstream 298650 51496862 ~ 51525086 (+) True XLOC_000652
TCONS_00001123 mRNA downstream 1026 51827046 ~ 51829291 (+) True XLOC_000659
TCONS_00001124 mRNA downstream 70127 51896147 ~ 52086496 (+) False XLOC_000661
TCONS_00001125 mRNA downstream 77393 51903413 ~ 51961732 (+) True XLOC_000661
TCONS_00001127 mRNA downstream 304193 52130213 ~ 52137313 (+) True XLOC_000662
TCONS_00001128 mRNA downstream 311508 52137528 ~ 52152993 (+) False XLOC_000663
TCONS_00001119 other upstream 140118 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001111 other upstream 358154 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001097 other upstream 750629 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001084 other upstream 969258 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001079 other upstream 1691727 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001126 other downstream 304144 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001154 other downstream 1173812 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001160 other downstream 1538490 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001166 other downstream 1561745 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001180 other downstream 2227084 54053104 ~ 54061210 (+) True XLOC_000705

Expression Profile

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