RNA id: TCONS_00003160


Basic Information

Item Value
RNA id TCONS_00003160
length 2694
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_000643
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51015858 ~ 51018551 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctgcagaaatctgcgcgcgcagattccgtgtgggcctactaaaaacacaccaataataccaccactactactaaaCAACAAGGCTACAACAACAAAGAATTTTGACTACAAATGACTACATCACAACAACTACAAAGACATGACTACAACACACTAAAATCAAGACTACAACACAACAACCCTACTACAACAACTAAAATATGACATTTTGCCTACAAAATGACCACAACACAACTACAACAAACAGGCTACAACTAAAATATGATAGTTTGACTACAAAATAACTACAGCACAACAACTACAATGACATGACTACAACACTAACAACAAAACTACAACACAACAACCCAACTACAACAACTAAAATATGACATTTTGCCTACAAAATGACCACAACACAACTACAACAAACAGGCTACAACTAAAATATGATAGTTTGACTACAAAATAACTACAGCACAACAACTACAATGACATGACTACAACACTAACAACAAAACTACAACACAACAACCCAACTACAACAActaaaatatgacattttgacTACAAAATGCCTACACAACAACTACAACGGCACGACTACAACACACTAACAACAAGATTACAATCTTACAACTAAACTATGATATTTTCAATTCAAAATGGCTACAACGCCATGACTACAACACACTGACAACATAACTACAACACATCAACAAGAAGACCACAACCCGACTACAACTAAAATGACATTTTGCATACAAAATGACTACAGCACACCAACAACATGACTATaacacaccaacaacaacaacaacgtcaCTACAACAAATACAACGGCATGACTAACACACTAACAACATGACTACAACCCAACTacaacaactaaataaaatatgacatgtTGACTACAAAATGACAACAACACAACTAACAATAGGAGTACAACACACCGACAACCATACTACAACACGACACCCCAACTAAAATAATACATTGActacaaaataacaacacaacaaCCACACAACTACAACTAAAATATGACTACAACATAACTACGGCACAAACAACTACAACAGCATGACTACCACACACTAACAACCTAACAACAACCCAACTACAACAATGACATGTTGACTACAAAATGACAACAACACACTAACAATGGAAGTACAACACACCGACAACCAGACTACAACACCCCAACTAAAATAAGACATTGACTACAAAATGCCTACACAACAACTACAACGGCATGACTACAACACTAGTAACGTGACTACAACCCAACACAACAGCCTGCTTACAACTTAAGTATGACATTTTGAGTACAAAATAACTACAGCACTACTACAACAGCATAACCACAACACAGCTACAATACACAAACAACATGACTACaactaaaatattacattttgactACGAAATAACTACACAACAACCACAACACACCAACGACACGACTACAACTAAAATATAACGTTTTGACCAACTAAAAGATGACTACAACATAACTAcagcacaaacaacaacaacagcatgaCTACCACACACTAACAACGTGACAACAACCCAACTACAACAACTGAAATATGACATGTTGACTACAAAATGACAACAACACACTAACAATGGGAGTACAACACACCGACAACCAGACTACAACACCCCAACTAAAATAAGACATTGACTACAAAATCCCTACACAACAACTACAACGGCATGACTACAACACACTAGCAATGTGACAACAGCCTGAGTACAACTTAAGTATGACATTTTGAGTACAAAATAACTACAGCACTACTACAACAGCATGactacaacacacaaacaacatgaCTACAACTAAAATGACATTGAGTACAAAATGACTATAGCACACCAACAACATGATTATAACACACTAACAACAAGATTGAAACACAACAACCCAACTACAACAACTAAATTATGACATGTTGACTACAAAATGACTACACAACAACTACAACGGCATGACTACCACACACTAACGATGTGACTACAACCCAACTACAACAACTAAGCAACAACTGTAGCACAAACAACTACAATGCGACAACAGCATGCCTACAACAACAATATGGTTAGAGCTTGACTACAACATGACTACAGCGCAACTACAACAAGAACATGACTACAATGCTACATCATGTCTACAGCGCAAATGTGTCACGATTACAGCAGGACTACTACAACACAACTATGACTACAAACCACAGCATAACTGAAACAAGACGATTCTATCATGATTACAGCATGACTACTACAACACAACTATGATTACAGCATGACTACTACAACACAACTATGATTACAACATGACTACTACAACACAACTATGATTACAGCATGACTACTACAACACAACTATGATTACAGCATGACTACTACAACACAACTATGATTACAGCATGATTACAGCCTCCATCATGTCACTGGGGCATTTATTattcatgtgtgtatgtataaatgtgtgaAATGTGAGTGTGGCCATCAAAAGCCGTCTGTCTGACCAGCATTAAATGCCCATCATACGTGACAGTGAGCTGGGCTGAATATTCAGGTTTAGCATGACTGGTTTTGCTGCTATGTAGCTCTCAGTAATGGCAGAGGATGGAAACAGGTGCTGTCCCTTTAAAACCTCATCTGTCCATAgaaattaaaaagatttttgatCTTCA

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0007601 visual perception biological_process
GO:0030537 larval behavior biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0070142 synaptic vesicle budding biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0051656 establishment of organelle localization biological_process
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044297 cell body cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0098793 presynapse cellular_component
GO:0000149 SNARE binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001091 lncRNA upstream 31919 50977554 ~ 50983939 (+) False XLOC_000641
TCONS_00003159 lncRNA upstream 62300 50943592 ~ 50953558 (+) True XLOC_000640
TCONS_00001086 lncRNA upstream 91389 50921306 ~ 50924469 (+) True XLOC_000639
TCONS_00003158 lncRNA upstream 207410 50733156 ~ 50808448 (+) True XLOC_000637
TCONS_00003157 lncRNA upstream 484164 50528134 ~ 50531694 (+) True XLOC_000633
TCONS_00001095 lncRNA downstream 21007 51039558 ~ 51042332 (+) True XLOC_000644
TCONS_00001098 lncRNA downstream 48265 51066816 ~ 51073128 (+) True XLOC_000645
TCONS_00001114 lncRNA downstream 460595 51479146 ~ 51481022 (+) False XLOC_000652
TCONS_00002874 lncRNA downstream 676200 51694751 ~ 51717215 (+) True XLOC_000656
TCONS_00003161 lncRNA downstream 734427 51752978 ~ 51826020 (+) False XLOC_000658
TCONS_00001093 mRNA upstream 231 50997156 ~ 51015627 (+) True XLOC_000642
TCONS_00001088 mRNA upstream 24969 50968908 ~ 50990889 (+) False XLOC_000641
TCONS_00001089 mRNA upstream 24972 50976975 ~ 50990886 (+) False XLOC_000641
TCONS_00001092 mRNA upstream 27684 50987535 ~ 50988174 (+) True XLOC_000641
TCONS_00001087 mRNA upstream 32003 50968908 ~ 50983855 (+) False XLOC_000641
TCONS_00001094 mRNA downstream 21007 51039558 ~ 51042328 (+) False XLOC_000644
TCONS_00001096 mRNA downstream 48120 51066671 ~ 51073128 (+) False XLOC_000645
TCONS_00001099 mRNA downstream 172498 51191049 ~ 51194817 (+) False XLOC_000646
TCONS_00001100 mRNA downstream 172499 51191050 ~ 51197601 (+) False XLOC_000646
TCONS_00001101 mRNA downstream 172640 51191191 ~ 51196461 (+) True XLOC_000646
TCONS_00001084 other upstream 161380 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001079 other upstream 883849 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001068 other upstream 1300036 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001057 other upstream 1425035 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001054 other upstream 1543533 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001097 other downstream 48231 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001111 other downstream 446917 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001119 other downstream 664968 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001126 other downstream 1111613 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001154 other downstream 1981281 52999832 ~ 53061197 (+) False XLOC_000682

Expression Profile

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