XLOC_000644 (dpy30)


Basic Information

Item Value
gene id XLOC_000644
gene name dpy30
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51039558 ~ 51042332 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001094
TCAGATTCTACGTCGCGTCATTCAAGCGCGCGTTTTGCGCATGCGCAACGTCCACTGCGTAGAAACCAACAACAAACTATGGCGGACGAACACACTGATGCCGGGGAGAGCATGGAGGGACACACTCCTgTCCCAGAAAATCCCCATGCAGAATATGGCCTCACCGAAAACATCCAGAGAATAGCGGAGAATGAGAAAACTGCTGAAAAAGTGGGCAAACAGAAGGTGGACCCTCAGACGCTGCAGACTCTTCCCACACGAGCGTACCTGGATCAGACGGTGGTTCCTATTCTCCTGCAGGGCTTGTCGGTTCTGGCCAAGGAAAGGCCTCCAAATCCCATCGAGTTTTTAGCGGCTTTCTTACTGAAGAACAAATCTCAGTTTGAGGAACGGAATTGAAGGCACATCATGGAGGACTTAGGGTTTTGTTTTTTGCGTGTTGTGAATTTAAATGTTACGGTATCACActtcactttttttgttttgccaacatcactgtagtttttttttttgactaataAAACGTTCAAGCAGCAA
>TCONS_00001095
TCAGATTCTACGTCGCGTCATTCAAGCGCGCGTTTTGCGCATGCGCAACGTCCACTGCGTAGAAACCAACAACAAACTATGGCGGACGAACACACTGATGCCGGGGAGAGCATGGAGGGACACACTCCTgTCCCAGAAAATCCCCATGCAGAATATGGCCTCACCGAAAACATCCAGAGAATAGCGGAGAATGAGAAAACTGCTGAAAAAGTGGGCAAACAGAAGGTGGACCCTCAGACGCTGCAGACTCTTCCCACACGAGCGTACCTGGATCAGACGGTGGTTCCTATTCTCCTGCAGGGCTTGTCGGTTCTGGCCAAGGAAAGTAGGAGTGTCCTGAGCTGAAGCTCTTTTGGTGTGCTTGATGTAAATCCTATTGGTGTGAATTTGAGCAACGGAAAATGCCGTATTCATCATGGGCCTCCAAATCCCATCGAGTTTTTAGCGGCTTTCTTACTGAAGAACAAATCTCAGTTTGAGGAACGGAATTGAAGGCACATCATGGAGGACTTAGGGTTTTGTTTTTTGCGTGTTGTGAATTTAAATGTTACGGTATCACActtcactttttttgttttgccaacatcactgtagtttttttttttgactaataAAACGTTCAAGCAGCAATTGA

Function

symbol description
dpy30 Acts upstream of or within embryonic hemopoiesis. Predicted to be part of Set1C/COMPASS complex. Orthologous to human DPY30 (dpy-30 histone methyltransferase complex regulatory subunit).

GO:

id name namespace
GO:0006348 chromatin silencing at telomere biological_process
GO:0051568 histone H3-K4 methylation biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0044666 MLL3/4 complex cellular_component
GO:0048188 Set1C/COMPASS complex cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040718-136 Acts upstream of or within embryonic hemopoiesis. Predicted to be part of Set1C/COMPASS complex. Orthologous to human DPY30 (dpy-30 histone methyltransferase complex regulatory subunit).

Ensembl:

ensembl_id ENSDARG00000004427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001094 False 537 mRNA 0.47 5 51039558 51042328
TCONS_00001095 True 634 lncRNA 0.46 6 51039558 51042332

Neighbor

gene id symbol gene type direction distance location
XLOC_000643 NA coding upstream 21007 51015858 ~ 51018551 (+)
XLOC_000642 ugp2a coding upstream 23931 50997156 ~ 51015627 (+)
XLOC_000641 mdh1aa coding upstream 48669 50968908 ~ 50990889 (+)
XLOC_000640 NA coding upstream 86000 50943592 ~ 50953558 (+)
XLOC_000639 otx2a coding upstream 109601 50921266 ~ 50929957 (+)
XLOC_000645 srd5a2a coding downstream 24339 51066671 ~ 51073128 (+)
XLOC_000646 btbd3a coding downstream 148717 51191049 ~ 51197601 (+)
XLOC_000647 ndufaf5 coding downstream 178988 51221320 ~ 51229456 (+)
XLOC_000648 mast1a coding downstream 270420 51312752 ~ 51377850 (+)
XLOC_000649 atg4da coding downstream 344317 51386649 ~ 51406531 (+)
XLOC_000638 BX855617.1 non-coding upstream 185080 50854364 ~ 50854478 (+)
XLOC_000637 NA non-coding upstream 231110 50733156 ~ 50808448 (+)
XLOC_000633 NA non-coding upstream 507864 50528134 ~ 50531694 (+)
XLOC_000651 BX547996.1 non-coding downstream 423136 51465468 ~ 51465582 (+)
XLOC_000655 CU464066.1 non-coding downstream 641187 51683519 ~ 51683618 (+)
XLOC_000656 NA non-coding downstream 652419 51694751 ~ 51717215 (+)
XLOC_000658 NA non-coding downstream 710646 51752978 ~ 51826020 (+)
XLOC_000660 NA non-coding downstream 808229 51850561 ~ 51864765 (+)

Expression


Co-expression Network