XLOC_000649 (atg4da)


Basic Information

Item Value
gene id XLOC_000649
gene name atg4da
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 51386649 ~ 51406531 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001108
TCTTCATGACAACAGGAAGTAGCAGCACACGGGTTTAATCGCTCGTCGTTTTAAACACTATTCGTCCGATCTGCAATTTTTCGACAGCCGGGTAAAGAGCCAAGAAACAGACACTCATGACTGCAGCTTTACCCGATAATCAGCGAGATGACGGCGCTGGAAGAGGCCTGAGTTCGGTCTGAAACAGCGCTTGTCCTTGCGGTCGGACAGCGATACTGGAGATTCAGAGGAAAAGTATGAAAATATCCGGAACATCAGACATGCCTGGTCTGACGTGAAAATAACGCTTGAAATGGCTGAAGTTTGTAATGCTGCGTCTCCAGCCTGAATCATGAACTCTGTGTCTCCCAGTGCTGTTCAGTATATAGTGGGTGGTGGAGCTCATGAGGACAAGGCTTCAGCTTCGTCCAAACGCCACCTTGGCCATGGGGCGGTTCCCGACGGCATCAGAGAAGGTTCTGGAGAGCCTGATGAAGTGGATCGCCTTAAAGCCAAGTTCATGTCGGCCTGGAACAACGTCAAATATGGCTGGACCGTTAAATCTAAAACTTCCTTCAACAAGAGCTCTCCTCTGATCCTGCTGGGGCAGTCGTTTCTGTTCAATAATGAAGACGAGGTGGAGCGTTTCCGGCAGACGTTTGTGTCATGTGTGTGGCTGACCTACAGACGGGAGTTTCCTCAGCTGGATGGGTCGAGTCTGACCACAGACTGCGGCTGGGGCTGCATGCTGCGCAGCGGACAGATGATGCTGGCGCAGGGGCTCCTGCTACACCTCATGCCCACAGACTGGAGGTGGTCAGACTGTCATGCGCTCACAGATGTGGATTTCGAGGTGCTGAAGCCTCGTTCTCCTTCTCGTCCGGCTGGGATGTCCATGCCGTCTTTCAGTTCCTCTTGGAGCAGCTCTATTCCTCAGATAAACCCCAGTCCAGGCATCACTGAGGCCCACAGGCGGGCGCCGGCCAGATGTCCTTCAGCCAGTCCTGACCCGCAGGTAGATGCTCTGCATCGGAAGGTAGTGTCCTGTTTTGGGGATCACCCCTCCGCTCCTTTTGGCGTCCACCAACTGGTAGAGCTGGGAAAGGAGTCTGGAAAGAGGGCAGGAGACTGGTATGGCCCGTCTGTAGTAGCACACATGCTGAGaAAAGCTGTGGCGCGAGCTGCTGAGTTTGAGGATCTTGCTGTGTATGTGGCGCAGGACTGCACTGTATATAAAGAAGATGTCATGAGTTTGTGTGAGTCCAGCGGTGTGGGGTGGAAATCAGTCGTCATTCTAGTGCCAGTGCGACTTGGGGGAGAGTCACTAAACCCTTCATACATTGAGTGTGTCAAGAATATTCTCAAGTTAAAATGCTGTATAGGAATTATTGGAGGGAAACCCAAGCATTCACTGTTTTTTGTCGGCTTTCAAGATGAGCAGCTGTTATATCTGGACCCACACTACTGTCAGCCGGTGGTGGATGTCACTCAAGCCAATTTCTCTCTAGAGTCTTTTCACTGTAACTCTCCGAGGAAGATGAACTTCAGCCGAATGGACCCCAGCTGCACCATCGGCCTCTACGCTCGCTCTAAAACAGACTTCGAGTCCTTGTGCACGGCAGTCAGTGAAGCTTTGTCGTCCTCTAAGGAGAAGTATCCCATCTTCACGTTTGTGGAGGGCCGTGGGCAGATCTATGGCATGGAGGGTCCGAGTGGAGGGTCCGTGGACGCTCCTGCACACATCTTCACCTGCAGCAGATTGAGCCGCAACAACAAAAGAGGAAGCACAGATGAGTTTGTGCTGCTCTGAGctgattttttgtttttccacATGTAACACTGAGATTCTGCACTGAAGCGCCTCAAGCTGCTGATCCTCACGTCTCTAACCTGACACTGAGGCATCATGGGGAAAATAACTAACTGGATCATTTATCAAACAACACAGTCCTTCCAAAAAAAACGATGCTTTGCATAAAGAGAATATTGCAGATTTTTAGAAtactttttttatgctttttgagtTGTGATTTGATTATAAAAGTAGTTAAAAGTACAGTTTGCCCCAAAAGTTACGTTGTGTGAATTATGCttgaatttatttatgtttatttatttatgcatcatTGTAATCTGGCCccccaaatttttttttaaaatccaattATTCTCTCATTACTCAAAaacaagcatttatttaaattgtgaaGTGTTTTTGCGgctttaagtgtgttttgccttTAATTAATTTGTGCtcacttacatttttttatttattatgattacagTATTTTGTGGAAGCCAGTTTCCGCcactgaataataattaaaaaaatacaaattaaaaaaaatgtttgaagtcagaattctgaaCATCTtcaattttgagttataaagaCGCAATTGCAAGTTTGACGTCAGAATTCCAAGTTATAAAGCCAAAATTCTAAGATACAAAATCgcaattgcgagttataaagtcagcaTTCTGATTTATAAAGTCCCAATTCCAAGTTAGAAAGTCACAATTTTTAGGGATAAggtcacaattctgagtttatatcacGCAATTCTGAGATATAAAGTTACAATTCTTAGAGATAAGGTCACAATTCAGAGATTATATCACGTAATTCTGAGATGTAAAGTTACAATTCTGAGTTACAAAGTCACAATTCTTAGAGATAAGGTCACAATTCAGAGATTATATCATGCAATTCTGTGATATAACGTTACAACTTTACAACAACAAGTTATAAAATTAGAATTTCGAATCTCAGAATTCAGACTTTCTTACTCGGAATTCTaattttataactcagaattgctaCTTTATAGCTCGCAATTACTTAGAATTGTGACTtcataactcagaattgcgactttataactctaaattgtgactttataactaaGAATTTTAACTTTATAACTCGGAGTTGCAACTTTCTAACTCATAATTGAGACTATAACTTggaattttgactttataactcataatTGAGATTAGAACTAGAAATTTCGACTTTATTACTCGGAATTGCacctttataactcggaattgcgactacAACGTGGAAATGTGACTTTATAACTTGAAATAGTGACTacaactcagaattgcgactacaacttggaattgcgactttataacacGGAAATGCGACTAATTCgaaattgcgactttataactcggaattttGACTATAACTCGGAATTGTGACTAACTCGGAATTTTGACTATAACTCGTAATTGCAACTTCAGAATTTGGAGTTGTGACTTAACTCGAAATTGCGACTACAACTtgaaattgtgactttataactcggaattgtgaCTTAACttggaattgcgactttataactagGAATTGTGACTCATTttatttatgagttttttttattattattcagtggCAGGAACAGGCTTCCATAGTGCTGAGAGTTTTGACAGgagaaataaagtaaaaagtgAGGTTAATATCATTTTTGAATATTGATTTGTTAATTACACCATGAATGTTGTATGGATTCAGGAACTGATTCGTTGCTTTCTAAaattgttttgagtttttaaaaaaaaagcagttttcttgattatttggatttttttgtgacattatTTTCTTGACAATTAAGCAAACACTAACACCAGTGTCAGGGAGAAATAAAAATAGATCAATAAATCACTCTGCAAACTGGCATAATTTGCatgaaacattaataataataataataataatatttaatttgatttgatgtaGATAATTTTATGTGGAAACTTTTTTTTGCACTACATTTAATTCCtacatatttttaagaaaaactAATTTGCTTTGATTGTCGTATCAGCATGTTtttgcataaaatgtttttttaagaggAGATATgcttaattatttgtttaaaaataataattctagaAATACGCTTAATTTTCTTTATGCTTGGTTGAACCCTACATTTCTTTTGTAGAGTACACTTTAAATGTGGCATTGATTTATGAAGGGTTGATAATCGTTCTTTATCACTTTggttaatacacacacacacacacacacacacacgtctcaaACACTGAATACATGATCCTGCTGTTGCATTGCTGTCTATCAGAAGCTAAACCGGTACTCTGTGTTTTACTGTGGGCTCTATAACAGGAGGATTGTGGGTAATGACACTCATTGTTGCTGTAAGATATATATGGCTGGTTGCTTCTGTAAATTGTAAATCTTGTGTGCTTGAACTGAGTGTGTTTGGtttatttaatagtatttttttgaCGAGGACAGAGTTTAATGTTGAAAACTGTCTGTATATTTCATGTCGGATTTTTGCTTTTTCAGGTCAACGAAAGTTTGCTGTTACTGTTTGGTCTTATTTAAGCTGTTGATTTTATGTGTTTTTGATTGTGGTTATATTCGAGGAAGCAAAGCTCAACTGCTGTCACTGTGTAAACTATCACCTTTGAATCATTTTAGATGTTtgattgtgtgtttttgttttggattTTCTCTTAAGGGACCAGAGAATAAAAGGTGGATTTTGCCTGTTTGAGTGGACTTTAATGTGGACTGAATGGAAATATGGACATTATGTTTAAGTATATCAGTTGTCATCGCTATCCATCTGCACTTAAAAAGACATGACATGTTTTTATACAGCAATTTTGTTGTTTGTGAGTGTAAGTCAT
>TCONS_00001109
ATGAACTCTGTGTCTCCCAGTGCTGTTCAGTATATAGTGGGTGGTGGAGCTCATGAGGACAAGGCTTCAGCTTCGTCCAAACGCCACCTTGGCCATGGGGCGGTTCCCGACGGTTCTGGAGAGCCTGATGAAGTGGATCGCCTTAAAGCCAAGTTCATGTCGGCCTGGAACAACGTCAAATATGGCTGGACCGTTAAATCTAAAACTTCCTTCAACAAGAGCTCTCCTCTGATCCTGCTGGGGCAGTCGTTTCTGTTCAATAATGAAGACGAGGTGGAGCGTTTCCGGCAGACGTTTGTGTCATGTGTGTGGCTGACCTACAGACGGGAGTTTCCTCAGCTGGATGGGTCGAGTCTGACCACAGACTGCGGCTGGGGCTGCATGCTGCGCAGCGGACAGATGATGCTGGCGCAGGGGCTCCTGCTACACCTCATGCCCACAGACTGGAGGTGGTCAGACTGTCATGCGCTCACAGATGTGGATTTCGAGGTGCTGAAGCCTCGTTCTCCTTCTCGTCCGGCTGGGATGTCCATGCCGTCTTTCAGTTCCTCTTGGAGCAGCTCTATTCCTCAGATAAACCCCAGTCCAGGCATCACTGAGGCCCACAGTCCTGACCCGCAGGTAGATGCTCTGCATCGGAAGGTAGTGTCCTGTTTTGGGGATCACCCCTCCGCTCCTTTTGGCGTCCACCAACTGGTAGAGCTGGGAAAGGAGTCTGGAAAGAGGGCAGGAGACTGGTATGGCCCGTCTGTAGTAGCACACATGCTGAGaAAAGCTGTGGCGCGAGCTGCTGAGTTTGAGGATCTTGCTGTGTATGTGGCGCAGGACTGCACTGTATATAAAGAAGATGTCATGAGTTTGTGTGAGTCCAGCGGTGTGGGGTGGAAATCAGTCGTCATTCTAGTGCCAGTGCGACTTGGGGGAGAGTCACTAAACCCTTCATACATTGAGTGTGTCAAGAATATTCTCAAGTTAAAATGCTGTATAGGAATTATTGGAGGGAAACCCAAGCATTCACTGTTTTTTGTCGGCTTTCAAGATGAGCAGCTGTTATATCTGGACCCACACTACTGTCAGCCGGTGGTGGATGTCACTCAAGCCAATTTCTCTCTAGAGTCTTTTCACTGTAACTCTCCGAGGAAGATGAACTTCAGCCGAATGGACCCCAGCTGCACCATCGGCCTCTACGCTCGCTCTAAAACAGACTTCGAGTCCTTGTGCACGGCAGTCAGTGAAGCTTTGTCGTCCTCTAAGGAGAAGTATCCCATCTTCACGTTTGTGGAGGGCCGTGGGCAGATCTATGGCATGGAGGGTCCGAGTGGAGGGTCCGTGGACGCTCCTGCACACATCTTCACCTGCAGCAGATTGAGCCATGAGTTTGTGCTGCTCTGA

Function

symbol description
atg4da Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within cerebellar Purkinje cell differentiation and cerebellar neuron development. Predicted to be located in cytoplasm. Orthologous to human ATG4D (autophagy related 4D cysteine peptidase).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0021702 cerebellar Purkinje cell differentiation biological_process
GO:0098749 cerebellar neuron development biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-102 Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within cerebellar Purkinje cell differentiation and cerebellar neuron development. Predicted to be located in cytoplasm. Orthologous to human ATG4D (autophagy related 4D cysteine peptidase).

Ensembl:

ensembl_id ENSDARG00000043548

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001108 False 4671 mRNA 0.39 11 51386649 51406531
TCONS_00001109 True 1392 mRNA 0.53 13 51391082 51403649

Neighbor

gene id symbol gene type direction distance location
XLOC_000648 mast1a coding upstream 8799 51312752 ~ 51377850 (+)
XLOC_000647 ndufaf5 coding upstream 157193 51221320 ~ 51229456 (+)
XLOC_000646 btbd3a coding upstream 189048 51191049 ~ 51197601 (+)
XLOC_000645 srd5a2a coding upstream 313521 51066671 ~ 51073128 (+)
XLOC_000644 dpy30 coding upstream 344317 51039558 ~ 51042332 (+)
XLOC_000650 actr2a coding downstream 989 51407520 ~ 51428106 (+)
XLOC_000651 BX547996.1 coding downstream 58937 51465468 ~ 51465582 (+)
XLOC_000652 meis1a coding downstream 68563 51475094 ~ 51525086 (+)
XLOC_000653 etaa1 coding downstream 130719 51537250 ~ 51545917 (+)
XLOC_000654 zgc:165656 coding downstream 208975 51615506 ~ 51627129 (+)
XLOC_000643 NA non-coding upstream 368098 51015858 ~ 51018551 (+)
XLOC_000640 NA non-coding upstream 433091 50943592 ~ 50953558 (+)
XLOC_000638 BX855617.1 non-coding upstream 532171 50854364 ~ 50854478 (+)
XLOC_000637 NA non-coding upstream 578201 50733156 ~ 50808448 (+)
XLOC_000633 NA non-coding upstream 854955 50528134 ~ 50531694 (+)
XLOC_000655 CU464066.1 non-coding downstream 276988 51683519 ~ 51683618 (+)
XLOC_000656 NA non-coding downstream 288220 51694751 ~ 51717215 (+)
XLOC_000658 NA non-coding downstream 346447 51752978 ~ 51826020 (+)
XLOC_000660 NA non-coding downstream 444030 51850561 ~ 51864765 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008507 NA coding CM030126.1 CM030126.1 2910977 ~ 2913789 (-)