XLOC_000664 (best2)


Basic Information

Item Value
gene id XLOC_000664
gene name best2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52162642 ~ 52170135 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001130
ATGACAGTCACGTACACCGCCAGAGTAGCCAACGCTCGCTTCTGCGGCTTCTCCAAACTCCTGCTGGCCTGGAAGGGAAGCATCTATAAAGTCCTTTACAAAGAGTTTCTGGCCTTCTTCGCCATGTACACGGCCATCAGCATCACGTAcagATTCTTCCTTGTGGACGGTCAGAAGAGATACTTCGAAAAGCTTTCCATTTACTGCGACAACTACGCCAGCCTCATCCCAATGTCTTTTGTTTTAGGGTTTTACGTGACGCTAGTGGTGAACCGCTGGTGGAGTCAGTACACGTCCATCCCGCTGCCAGACAGAGTGATGTGTGTTCTGTCGGGTGGTGTTCAGGGCAGTGATGAGCGCGGACGGCTCCTGCGCCGCACACTGATGCGCTACAGCAGTCTGTCCGCTCTGCTGATCCTGCGCTCCGTCAGCACCGCCGTCTTCAAGAGATTCCCCACCATAGACCATGTGGTGGAGGCAGGATTTATGACTCGCGAAGAGCGCAAGAAGTTTGAGAGTTTACACTCGCCATATAACAAGTACTGGATCCCGTGTGTGTGGTTCACTAACCTAGCCGCCGCTGCCCGCTGTGAGGGCCGAATCAAAGACGATAACACCTACAAGCTTCTGCTGGAGGTAAATACACTCAAGAATGGATTTATTAAAGTAAGAGTCAGAGTTGACCATTTTTTTTCATGGAAAAGGCGCTAA
>TCONS_00001131
ATGACAGTCACGTACACCGCCAGAGTAGCCAACGCTCGCTTCTGCGGCTTCTCCAAACTCCTGCTGGCCTGGAAGGGAAGCATCTATAAAGTCCTTTACAAAGAGTTTCTGGCCTTCTTCGCCATGTACACGGCCATCAGCATCACGTAcagATTCTTCCTTGTGGACGGTCAGAAGAGATACTTCGAAAAGCTTTCCATTTACTGCGACAACTACGCCAGCCTCATCCCAATGTCTTTTGTTTTAGGTATGCGGTTTTACGTGACGCTAGTGGTGAACCGCTGGTGGAGTCAGTACACGTCCATCCCGCTGCCAGACAGAGTGATGTGTGTTCTGTCGGGTGGTGTTCAGGGCAGTGATGAGCGCGGACGGCTCCTGCGCCGCACACTGATGCGCTACAGCAGTCTGTCCGCTCTGCTGATCCTGCGCTCCGTCAGCACCGCCGTCTTCAAGAGATTCCCCACCATAGACCATGTGGTGGAGGCAGGATTTATGACTCGCGAAGAGCGCAAGAAGTTTGAGAGTTTACACTCGCCATATAACAAGTACTGGATCCCGTGTGTGTGGTTCACTAACCTAGCCGCCGCTGCCCGCTGTGAGGGCCGAATCAAAGACGATAACACCTACAAGCTTCTGCTGGAGGAGCTAAACAACTTCCGGGGGAAGTGCAGCATGCTGTTTCACTACGACATGATCAGCGTACCGTTGGTCTACACTCAGGTCGTGACTCTGGCGGTCTACAGTTTCTTTCTTGTGTGTCTGATTGGTCGCCAGTTTCTGGATCCGGGTCAGGGTTACCCTGGTCATGACCTTGACCTTTACGTCCCCATCTTCACTCTCCTGCAGTTCTTTTTCTATGCGGGCTGGCTGAAGGTGGCAGAGCAGCTCATTAACCCATTTGGAGAGGATGATGATGACTTCGAGACCAACTGGCTGATTGATAGAAACTTCCAGGTGTCTATGATGGCAGTGGATGAGATGTATGGGGATTTACCCATGATGGAGAGAGATCGCTACTGGAACGACTCCAATCCTCGTCCACCGTACACTGCCGCAACGCTCTTCGTGCTGCGCAAACCCTCTTTCCAGGGCTCCACCTTCGACATGACAATCCCCAAAGAGGAGATGCATTTCCAGCCTCTGGAGGACATTGCTGAAAACCTGGAGGAATCTGGGACTCGGAATCACAACCTGGCCCTTTTTAACCGTCTCCTCGGCTCCGCCCCCTCCCCAACAAGCTTCATGGGTGGAGCTTTACGACGCACCTCCGCCCAGCTGCGCCGATTGACCCGCTCCGCCAGCACAGACCCGTCGTTCT
>TCONS_00001132
ATGTGTGTTCTGTCGGGTGGTGTTCAGGGCAGTGATGAGCGCGGACGGCTCCTGCGCCGCACACTGATGCGCTACAGCAGTCTGTCCGCTCTGCTGATCCTGCGCTCCGTCAGCACCGCCGTCTTCAAGAGATTCCCCACCATAGACCATGTGGTGGAGGCAGGATTTATGACTCGCGAAGAGCGCAAGAAGTTTGAGAGTTTACACTCGCCATATAACAAGTACTGGATCCCGTGTGTGTGGTTCACTAACCTAGCCGCCGCTGCCCGCTGTGAGGGCCGAATCAAAGACGATAACACCTACAAGCTTCTGCTGGAGGAGCTAAACAACTTCCGGGGGAAGTGCAGCATGCTGTTTCACTACGACATGATCAGCGTACCGTTGGTCTACACTCAGGTCAGATTCACGATTAAGGCAgagtttacactagtgtgtttttgA

Function

symbol description
best2 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Orthologous to human BEST2 (bestrophin 2).

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0006821 chloride transport biological_process
GO:0034707 chloride channel complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005254 chloride channel activity molecular_function

KEGG:

id description
ko04970 Salivary secretion
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-090312-127 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Orthologous to human BEST2 (bestrophin 2).

Ensembl:

ensembl_id ENSDARG00000079163

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001130 False 711 mRNA 0.51 4 52162642 52165830
TCONS_00001131 False 1318 mRNA 0.54 9 52162642 52170135
TCONS_00001132 True 441 mRNA 0.54 3 52164893 52167104

Neighbor

gene id symbol gene type direction distance location
XLOC_000663 get3 coding upstream 9649 52137528 ~ 52152993 (+)
XLOC_000662 rnf11a coding upstream 25329 52130164 ~ 52137313 (+)
XLOC_000661 nfixa coding upstream 76146 51896147 ~ 52086496 (+)
XLOC_000660 NA coding upstream 297877 51850561 ~ 51864765 (+)
XLOC_000659 dand5 coding upstream 333351 51827046 ~ 51829291 (+)
XLOC_000665 NA coding downstream 175820 52345955 ~ 52346899 (+)
XLOC_000666 LO017718.1 coding downstream 183027 52353162 ~ 52363107 (+)
XLOC_000667 NA coding downstream 193267 52363402 ~ 52368198 (+)
XLOC_000668 NA coding downstream 194895 52365030 ~ 52367577 (+)
XLOC_000669 si:ch211-217k17.8 coding downstream 222376 52392511 ~ 52396264 (+)
XLOC_000658 NA non-coding upstream 336622 51752978 ~ 51826020 (+)
XLOC_000656 NA non-coding upstream 445427 51694751 ~ 51717215 (+)
XLOC_000655 CU464066.1 non-coding upstream 479024 51683519 ~ 51683618 (+)
XLOC_000651 BX547996.1 non-coding upstream 697060 51465468 ~ 51465582 (+)
XLOC_000673 BX323839.1 non-coding downstream 324908 52495043 ~ 52510756 (+)

Expression


Co-expression Network