RNA id: AMCG00008520


Basic Information

Item Value
RNA id AMCG00008520
length 1188
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00008520
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3116825 ~ 3121999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTCTATCTCCGCATCGACACGTTAAACCTGCAGTACAAGTGTCCGCGGCGCCCCGCTCCCTCTGCCCCGGTCAATCGCACTCGTATCCCCACAACCGCGCACCGGCTCTGCGTCTTCCTCCGCCAGGGCGACGTGTTCTCAACAGCGCTGGCTTCAAGTTTGAGCCAAAATGGCGCCCTACTCCCGCTGGCCCAGCTCGCACCCCTCCGCACGTATAAGCCTTGGTACGGCCGCCAGCCTGACCCGGTTTTCAAGATGGCAGCCTCAGTAGAAGAAGAGTATGAAGATGCGCCTGATGTGGAGCCGCTGGAGCCGACATTGAAAAACATCATCGAGCAGAAGTCGCTCAAATGGATTTTCGTGGGGGGCAAAGGCGGCGTGGGCAAAACCACCTGCAGCTGCAGTCTGGCCGTGCAGCTGGCGTCCGTGCGCGAGAGCGTGCTCATCATCTCCACGGACCCCGCCCACAACATCTCGGACGCCTTCGACCAGAAGTTCTCCAAAGTCCCCACCAAAGTCAAGGGCTACGACAACCTCTTTGCCATGgagatCGACCCCAGCCTGGGTGTGGCGGAGCTGCCGGACGAGTTCTTTGAGGAGGACAACATGCTCAGTATGGGCAAGAAGATGATGCAGGAGGCCATGAGTGCCTTCCCCGGGATCGACGAGGCCATGAGCTACGCAGAGGTCATGAGGTTGGTGAAAGGCATGAACTTCTCCGTGGTGGTGTTCGACACGGCCCCCACCGGGCACACCCTGCGCCTGCTCAACTTCCCCACCATCGTGGAGCGGGGGCTGGGCCGGCTCATGCAGATCAAGAACCAGATCAGCCCCTTCATCTCGCAGatgtgcaacaTGCTGGGCCTGGGGGACATGAACGCGGACCAGCTGGCCTCGAAGCTGGAGGAGACGCTGCCCGTGATCCGCTCCGTCAGTGAGCAATTCAAGGACCCGGAGCAGACGACGTTCATCTGTGTGTGCATCGCTGAGTTCCTGTCGCTGTACGAGACGGAGCGGCTGATCCAGGAGCTGGCCAAGTGCAAGATCGACACGCACAACATCATTGTCAACCAGCTGGTCTTCCCCGACGGCGACCGGCCCTGCAAGATGTGCGAGGCGCGGCACAAGATCCAaACACACCTCACGCAGTATCGAAACCCAACCACACTACAGAACTCTTGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006810 transport biological_process
GO:0045048 protein insertion into ER membrane biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K01551 arsA, ASNA1, GET3; arsenite/tail-anchored protein-transporting ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62058 lncRNA downstream 141672 2974949 ~ 2975153 (-) True G49614
TU62048 lncRNA downstream 206197 2909662 ~ 2910628 (-) True G49606
TU61973 lncRNA downstream 292849 2823241 ~ 2823976 (-) True G49547
TU61913 lncRNA downstream 414403 2636915 ~ 2702422 (-) True AMCG00008491
TU61850 lncRNA downstream 680068 2377005 ~ 2436757 (-) True G49462
TU62306 lncRNA upstream 251545 3373544 ~ 3379324 (-) True G49802
TU62310 lncRNA upstream 268204 3390203 ~ 3392090 (-) True G49806
TU62317 lncRNA upstream 292182 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA upstream 303783 3425782 ~ 3437347 (-) True G49810
TU62322 lncRNA upstream 308815 3430814 ~ 3863106 (-) True AMCG00008554
AMCG00008519 mRNA downstream 5141 3104606 ~ 3111684 (-) True AMCG00008519
AMCG00008511 mRNA downstream 87137 3028669 ~ 3029688 (-) True AMCG00008511
AMCG00008513 mRNA downstream 93300 3021743 ~ 3023525 (-) True AMCG00008513
AMCG00008512 mRNA downstream 102758 3011857 ~ 3014067 (-) True AMCG00008512
AMCG00008508 mRNA downstream 166825 2922885 ~ 2950000 (-) True AMCG00008508
AMCG00008518 mRNA upstream 6984 3128983 ~ 3131059 (-) True AMCG00008518
AMCG00008521 mRNA upstream 26639 3148638 ~ 3172971 (-) True AMCG00008521
AMCG00008522 mRNA upstream 108843 3230842 ~ 3235566 (-) True AMCG00008522
AMCG00008524 mRNA upstream 223536 3345535 ~ 3346773 (-) True AMCG00008524
AMCG00008528 mRNA upstream 234715 3356714 ~ 3370613 (-) True AMCG00008528
TU62046 other downstream 208160 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1031819 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1235863 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1266543 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2176173 931892 ~ 940652 (-) False AMCG00008428
TU62371 other upstream 652584 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2626891 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2665751 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3825890 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 4023626 7145625 ~ 7151472 (-) True G50476

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001128 False 4613 mRNA 0.38 7 NC_007112.7 52137528 ~ 52152993 (+)
grasscarp (Ctenopharyngodon idella) CI01000301_01733407_01741572.mRNA True 1094 mRNA 0.51 7 CI01000301 1733407 ~ 1741634 (+)