RNA id: TCONS_00001134


Basic Information

Item Value
RNA id TCONS_00001134
length 641
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_000669
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52392511 ~ 52396264 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGCCACAGCGGATTACCAATAAGGGTGTTCGGTATAAAATATCTTCTCAAAGACCGACTCTGTTTGCTGTGGGCCACTTTCCAGAATGAAGAGAAAAAGTTTAATAACATTTTGCACTTTTTTTGCAGTGCATTTTCTAAGTGCAACAGCTCAGAACACAACAGCTTCCACATCATCAGGAGCCACAACTGAAACATCCACCTCTACTACACAGACACCACAGACTACACTTACAACACCTACAACGACTGGATCATCCACCACTGCTACAACAGCATCACAAACTACTGCAACATCAACTGGATCCTCCACAACAACTTCCGGAATATCCACCAGTAGTACAGCATCACAATCATCTACATTTACATTAGTCAGCTCAACAACCATTCCTTCTACAATATCAACGGTTTCTACAGTGTCCACAGTTTCCACAGCCTCTACACCTGCAGTGTCCTCGGTGTCTACAGAGACTACAACTTCTACAACTGCAGTGTCCTCACCAACTACAGCTTCTACAACTGCAGTTACCTCACCAACTACAGCTTCTACAACTGCAGTGTCCTCACCAACTACAGTTTCTTCAACTGCAGTGTCCTCAACAACACCAGGGTCTACAACAGCAGCGTCTTCACCAACTAC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-031010-46 Is expressed in EVL; epidermis; periderm; and pharynx.

Ensembl:

ensembl_id ENSDART00000144025

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003167 lncRNA upstream 24313 52363402 ~ 52368198 (+) True XLOC_000667
TCONS_00002875 lncRNA upstream 24934 52365030 ~ 52367577 (+) True XLOC_000668
TCONS_00001133 lncRNA upstream 29404 52353162 ~ 52363107 (+) True XLOC_000666
TCONS_00003166 lncRNA upstream 45612 52345955 ~ 52346899 (+) True XLOC_000665
TCONS_00003165 lncRNA upstream 527746 51850561 ~ 51864765 (+) True XLOC_000660
TCONS_00001136 lncRNA downstream 2478 52398742 ~ 52399683 (+) True XLOC_000670
TCONS_00001139 lncRNA downstream 98779 52495043 ~ 52510756 (+) False XLOC_000673
TCONS_00001140 lncRNA downstream 104681 52500945 ~ 52505169 (+) True XLOC_000673
TCONS_00001143 lncRNA downstream 167004 52563268 ~ 52565950 (+) False XLOC_000675
TCONS_00002876 lncRNA downstream 411368 52807632 ~ 52807843 (+) True XLOC_000681
TCONS_00001131 mRNA upstream 222376 52162642 ~ 52170135 (+) False XLOC_000664
TCONS_00001132 mRNA upstream 225407 52164893 ~ 52167104 (+) True XLOC_000664
TCONS_00001130 mRNA upstream 226681 52162642 ~ 52165830 (+) False XLOC_000664
TCONS_00001128 mRNA upstream 239518 52137528 ~ 52152993 (+) False XLOC_000663
TCONS_00001129 mRNA upstream 242001 52137581 ~ 52150510 (+) True XLOC_000663
TCONS_00001135 mRNA downstream 1941 52398205 ~ 52400660 (+) False XLOC_000670
TCONS_00001137 mRNA downstream 65804 52462068 ~ 52478746 (+) True XLOC_000671
TCONS_00001138 mRNA downstream 85068 52481332 ~ 52486995 (+) True XLOC_000672
TCONS_00001141 mRNA downstream 121912 52518176 ~ 52538517 (+) True XLOC_000674
TCONS_00001142 mRNA downstream 164285 52560549 ~ 52628407 (+) False XLOC_000675
TCONS_00001126 other upstream 257009 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001119 other upstream 708893 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001111 other upstream 926929 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001097 other upstream 1319404 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001084 other upstream 1538033 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001154 other downstream 603568 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001160 other downstream 968246 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001166 other downstream 991501 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001180 other downstream 1656840 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001186 other downstream 1789775 54186039 ~ 54186156 (+) True XLOC_000710

Expression Profile

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