XLOC_000674 (tacr3l)


Basic Information

Item Value
gene id XLOC_000674
gene name tacr3l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 52518176 ~ 52538517 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001141
ATGGCTGGTCCTCAGAGCGGCTCAAATGTGACGCGTAATTTCACAAATCAGTTCGTGCAGCCGCCGTGGCGGGTCGCCGTCTGGTCGGTCGCTTACAGCTCGGTGCTCGCGGTCGCCGTGTTCGGAAACCTCATTGTTATTTGGATCATTTTGGCCCATAAACGGATGCGCACCGTCACCAACTATTTTTTGCTCAACCTGGCGTTTTCCGACGCGTCCATGGCCGCCTTCAACACGCTCATCAACTTCATTTACGCCACGCACGGAGAGTGGTACTTCGGAGAGGTTTACTGCAAGTTCCACAACTTCTTCCCTGTGACCGCCGTGTTTGCCAGCATTTACTCCATGACAGCGATTGCAGTCGACAGGTACATGGCCATAATACATCCTCTGAAGCCTCGTCTGTCAGCCACGGCTACTAAAGTGGTGATTGTCTGTATTTGGGCACTGGCAGTGATTTTGGCTTTCCCGCTGTGTTTCTACTCCACCACGAGAACCATGCCTCGCAGAACCATTTGCTACGTCGCCTGGCCAAGACCGGCTGAGGATTCATTCATGTATCACATCATAGTGACGGTGCTGGTCTACATGCTGCCCCTAGTGGTGATGGGCATCACCTACACTATAGTCGGGGTTACACTTTGGGGAGGAGAGATTCCTGGAGACTCGTCGGACAATTATGTTGGACAGCTACGTGCTAAGAGGAAGGTGGTGAAGATGATGATCGTGGTGGTGGTGACTTTCGCCCTCTGCTGGTTGCCGTATCACATCTATTTCATCGTAACAGGCCTGAACAAACGCCTGAACAAGTGGAAGTCCATCCAGCAGGTGTATCTGTCTGTGCTGTGGCTGGCCATGAGCTCCACCATGTACAACCCCATCATTTACTGCTGTCTGAATGGCAGATTTCGCGCGGGCTTCAAGCGGGCCTTCAGGTGGTGTCCCTTCATTCAGGTGTCCAGCTATGACGAACTGGAACTCCGTCCCACCCGGCTCCATCCACGCAACCAGAGCAGCATGTGCACCCTGTCCCGCGTCGACACCAGCCTCCATGGTGAGGACCCACGACGCAGTCAGCGGAAGAGCACCAAATCCCAATGTCTGGTGGAGGTCAGAGACGAAAACACACCAGCCACGAAACTCTGTCTTAATAGAGATCAAGCGTTCGCAACAGAGCAGCTCAGCTGAAGAGTGCATGATTATAGAATTAAAGCATATTCTAAAAATGCATTTAAGTGTGCATTGAGACTCAAAGCTGCAGCGTGATGAGGTTACACTGCCTCCAAGTGGAGAACTTTAAAGCATGCTACAAAATgctgcatatttttttattaaatatgatgaGGGCACATGCatttatcaatattttaaaaatgtgcatggatagattgtttataataaacactgcaatatTTCTATTccaaaacaaaaaaggaaaggaaaaatcCTACTTTGGATCTGATTGTTGCATGACAATATACACTTTTTGCAATGCTCAAAATATTATGCTAAACTGCAGGCTCAAACCTCATCACGTTGCCATTGAAGCTGTTtcatccacactgaaaaaaatgatgtctgcaaaattgttgctaataatttatatgggttgaatttaatcaaacaaattaagcttaataatgttaaatttaatttgtttctttaaattcaacccaaataaattgtttacaacctcttaacTTAAaagaatttagtaaatccaaggaataatctttgaataatttttttagtgGCAAGGAATAGAAACTAAATGTCCAAATTTTCCAAATTTAAAgtccaaacttttatttaaagtccacatttttattttttttcacagattaacatctcattcattaattttccttcggcttagtctctactttagaggtcgccacagttgaatgaaccgccaactatttcagaatatgttttacgcagcggatgcccttccagccgcaacccagtgctgggaaacacccatacacactcattcacacacatactcatgcactacagccaactttgtttacccaattcatctatagcacaaagtttcccccagagtccaaagacatgcgctataggtgaattgggtaaaaaaaattggccgtagtgtgtgtgaatagcTGCTTTTCCGCTGTCGCGGCTAGAGCAAGCCAGTGCGGGCCAGGGCCAGTCAAATTTCCACAGTCTCTTCCAGGGCCTGATCAGCCCAAAGCTGGGTGTCCTCAGGGCCAGCGGCCAGCCTTTTCAGCCcgccaaataccttgggccaaagtgagccagctggggcttcgggggcGGAGTAAAAGCAAAATTCGAATCTGGTAAAGATGCTGTGCTGTGAATtcagtaaactaaattggccgtagtgtatgtgtttatattatatatgtgtttatattcagggttcatacggtcatgaaaaacctggaaaagtcatggaattttgacttagcattttccaggcctggaaaagttttggaaaaactgaAAAACCCAAAAGTttagaaaagtcatggaaaataGTTTAACATGTCTGTATACttaaatataggttagttgtctttacttatTTTCTGTCCATGGTTAAACACATGCTCTTACATTATTACTGCTGTGTGAGCATtatctaaatacattttacatagatataaagattaatttaaactaaatagttAGATGTTTTATAATATGGTGTAATAACTTTCAACATGCATCTCTTTTTTTATCATTTACCACGTATATGTAGACATTATATGAAatattaggtcatgaaaatttacttgaaagtcctggaaaagtcatggaaaagtagtttagtagtaaaaattttgtatgaaccctgtatattatatatggcggtcgctggttcaagtctccgctggatcagttagcatttctgtgtggagtttgcatgttctccccatgttggcgtgagtttcctccgggtgctccagtttcccacacggtccaaacacatgcgctataggtgaattgaataaactaaattgtccatagtgtatgagtgtgaatgagagtgtatgggtgtttctacgttatgggttgcagctggaagggcatccgctacgtaaaacatatgctggataagttggcggttcattccactgtggcgaccccagtttaataaagaaactaagctgaaaagaaaatgaataaatgaatgatatatatgtAAAACTCTAAATTCTGACTTATTTACtgaactgtaagaaaaaaaaaagtctgaattgtaaaaataaacacacaaaaaaacactttgaatttgagATAAGTCAcagttacattattattattatttattattataatcctCTGGCAGACATCTATATATTGCACGATCATCTTGGGTATAAAAATTGCTTTTGGCATATTTGATCAATTTTAGTGTGATAAAAAGTCTAGGCTGTTGGATACTGCTAAAATGATGCTGAAATTCATAATGCTTTTGGTTCATTCATCTCAGCAGAGTCAGACATGGATAGTAAGTTCAAGTATATCCAGATTGATGTGTATTTTGACAgatatctatataaatatatcatgCATTAAGATTGACATTGTGTGCATTCAAAGCATACCCATCACTTATCTGTCTGTATTAAATGATGTCTATAATAATATAGAGTGATTTAACTGAATGTAAAACTTAATAACACATCTAAGTCAACATACCTTCAGCCAGGTGGTAAAATCATGTGTAAAGCATGAAAGAGGCATCCAAAATAACTACAATAACGAGCTTTATCATAAAAGTATCCTCACATAGATTGATACAGAAAGCTCGGTTCTGCCCATGTTTTGTAAATAAGATCCAATGAATGTATTCGTTCATTGTGCTGTATTTATGG

Function

symbol description
tacr3l Enables tachykinin receptor activity. Predicted to be involved in positive regulation of flagellated sperm motility. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in several structures, including adipose tissue; brain; liver; pleuroperitoneal region; and retina. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 11 with or without anosmia. Orthologous to human TACR3 (tachykinin receptor 3).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:1902093 positive regulation of flagellated sperm motility biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0097225 sperm midpiece cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004995 tachykinin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-19 Enables tachykinin receptor activity. Predicted to be involved in positive regulation of flagellated sperm motility. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in several structures, including adipose tissue; brain; liver; pleuroperitoneal region; and retina. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 11 with or without anosmia. Orthologous to human TACR3 (tachykinin receptor 3).

Ensembl:

ensembl_id ENSDARG00000003054

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001141 True 3875 mRNA 0.41 5 52518176 52538517

Neighbor

gene id symbol gene type direction distance location
XLOC_000673 BX323839.1 coding upstream 7420 52495043 ~ 52510756 (+)
XLOC_000672 cldnd1b coding upstream 31181 52481332 ~ 52486995 (+)
XLOC_000671 glb1 coding upstream 39430 52462068 ~ 52478746 (+)
XLOC_000670 si:ch211-217k17.9 coding upstream 117516 52398205 ~ 52400660 (+)
XLOC_000669 si:ch211-217k17.8 coding upstream 121912 52392511 ~ 52396264 (+)
XLOC_000675 abca1a coding downstream 22032 52560549 ~ 52628407 (+)
XLOC_000676 slc44a1a coding downstream 94339 52632856 ~ 52652163 (+)
XLOC_000677 osbp coding downstream 123686 52662203 ~ 52699063 (+)
XLOC_000678 CABZ01021532.1 coding downstream 196967 52735484 ~ 52736125 (+)
XLOC_000679 wu:fc75a09 coding downstream 215568 52754085 ~ 52763447 (+)
XLOC_000667 NA non-coding upstream 149978 52363402 ~ 52368198 (+)
XLOC_000668 NA non-coding upstream 150599 52365030 ~ 52367577 (+)
XLOC_000666 LO017718.1 non-coding upstream 155069 52353162 ~ 52363107 (+)
XLOC_000665 NA non-coding upstream 171277 52345955 ~ 52346899 (+)
XLOC_000681 NA non-coding downstream 269115 52807632 ~ 52807843 (+)
XLOC_000684 NA non-coding downstream 727883 53266400 ~ 53278288 (+)
XLOC_000686 NA non-coding downstream 781642 53320159 ~ 53320674 (+)
XLOC_000687 NA non-coding downstream 782414 53320931 ~ 53321338 (+)
XLOC_000689 AL935166.1 non-coding downstream 825993 53364510 ~ 53368034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000302_00014935_00028662 TACR3L, TACR3A, TACR3, TACR3B coding CI01000302 null 14595 ~ 28711 (+)
bowfin (Amia calva) AMCG00020814 NA coding CM030127.1 CM030127.1 34342691 ~ 34357137 (+)