traf7 (traf7,LOC107601260,LOC107719978,LOC107590399,LOC107654453,LOC107721517)


Basic Information

Item Value
gene id traf7
gene name traf7,LOC107601260,LOC107719978,LOC107590399,LOC107654453,LOC107721517
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13796853 ~ 13808182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235797.1
CGACAATGATGCGTATTTGCTGTATCCGCACTACATTACCCACAATCCTCTTGTATGCGCGTCTGGGTGTAAGAGAAAAAGCTTAAAATTGGACCATCTGTAGACTTTGATTTAGCATCAATGGCTGCAGCAGATATTTTCGACAGGGCTTTGCTGTATTATGAGCTGTAGTAAACCATCGCGCTTCAACCGATTCTCAGGAGGATCTGTGGTAGGTGCCGCTAACACTATACCCTCACCTGACATCAGCAAACGGACCAAAATGGAAGCTAGTTTTGGATCCACTTTTCCAGCAGTCCCTCAAGTAGCAAAAGCAGACACTAATTACAAACAGCACCGTAGAACCCCTTCATCCTCCAGCACTCTGACCTACTCCCCTCGTGACGACGATGATGGCATGCCGCCCATTAGTACCCCTCGTCGCTCAGACTCTGCCATCTCGGTTCGCTCTCTGCACTCGGAGTCCAACATGTCGCTGCGCTCCACCTTTTCCCTGCACGAGGAAGAGGAAGACACAGAGCCACAGGTGTTTGCGGAGCAGCCCTCGGTTAAGCTTTGTTGCCAGCTGTGCTGCAGCGTGTTCAAGGACCCCGTCATCACCACCTGCGGACACACGTTCTGCAGGCGATGTGCCTTGACCTCAGAGAAATGCCCCGTGGACAATTCCAAGCTCACAGTGGTTGTGAATAACATAGCGGTGGCCGAGCAAATTGGAGAGCTTTTCATCCACTGCAAGTACGGCTGTCGGCCAGCTGCCTCGGGCAAACCCGGTGCCTTTGAGGTTGACCCACTTGGCTGTCCTTTCACCATCAAGCTAAGCACCAGGAAAGATCATGAAGTAAGCTGTGACTACAGACCTGTTCGCTGTCCCAACAACCCCAACTGCCCTCCATTGCTCACCATGAACCTGGAGGCCCATCTGAAAGAGTGTGAACACATTAAGTGCCCTCACTCTAAATATGGTTGCACCTTCATCGGGAATCAGGACACGTATGAGACTCATCTGGAGGTGTGTAAGTTTGAGGGCCTGAAAGAGTTTCTCCAGCAGACGGACGACAGATTTCACGAGATGCAGGTGACACTGGCGCAGAAGGACCAGGACATCTCGTTCCTGCGCTCCATGTTGGGCAAACTCTCAGAGAAACTAGACCAGCTGGAGAAGAACTTGGAGCTGAAGTTCGATGTGTTGGATGAGAACCAGAGTAAACTCAGTGAAGATCTGATGGAGTTCAGACGAGATGCTTCCATGCTGAATGATGAACTGTCTCACATCAATGCCAGGCTCAATATGGGTATACTGGGCTCCTATGACCCCCAGCAAATCTTCAAATGCAAGGGTACTTTTGTGGGCCACCAGGGTCCGGTGTGGTGTTTGTGCGTCTACTCCACTGGTGATCTTCTCTTTAGTGGGTCTTCAGATAAGTCCATCAAGGTTTGGGACACATGCACCACATATAAGTGCCAGAAGACCCTTGAGGGCCATGATGGCATAGTGTTGGCATTGTGCATTCAGGGAAACAAGCTTTACAGTGGGTCAGCTGATTGCACCATTATTGTTTGGGATATCCAGACCCTGCAGAAAGTGAACACCATCCGGGCACATGACAACCCAGTGTGCACTCTGGTGTCCTCGCACAACATGCTATTCAGCGGCTCTCTGAAAGCCATTAAGGTGTGGGATATTGTGGGCACGGAGCTGAAGCTAAAGAAGGAGCTAACTGGCTTGAATCACTGGGTTCGAGCTCTGGTTGCTTCTCAAAATCATCTGTACAGCGGATCTTATCAAACCATAAAGATCTGGGACATTCGTTCTCTGGAGTGTGTCCATGTGCTCCAGACCTCTGGAGGCAGTGTGTACTCCATTGCGGTCACCAATCACCATATAGTTTGTGGCACCTACGAGAACCTCATTCACGTTTGGGACATAGAGTCTAAAGAGCAGGTGCGGACGCTGACGGGCCACGTGGGCACAGTGTATGCCCTGGCTGTCATCTCAACCCCCGATCAGACCAAAGTGTTCAGTGCCTCCTATGATCGCTCTCTCAGGGTGTGGAGCATGGACAACATGATCTGCACCCAGACTCTGCTGCGGCACCAGGGCAGCGTGACGGCGCTCGCTGTGTCCAGAGGAAGACTCTTCTCTGGAGCTGTAGACAGCACTGTAAAGGTGTGGACATGCTAAGTGTGACCACTAATCGTTATTAGTTGTCAACATGTTGAGTAATGTCTTTCTAAACTCCTCGAACTCAGAAACCACATGGACTCTGATGCACAGACTTAAAGTATGAATAAGAATATTATTCAAGAAAACATGCATTGGaccagaaatgtttttattctgtacccTATGGACTTGGGTGTCTGTCCCTTGTGAATTTTGCAGTAAACCGTTAGGTAAAGAGGCCTAGCTTGACGCGCTGGATGGATGATGCTCATTTACTTTCCTCTTACCAGACATCTTTTGACAGCAAACAGAACCTCCAAACCTTCAGTGTTTATGAAGACCCAGCAGACAGCCAACATTCATCATAAACATGACGGCACtgtattttatacacacacatgcgtgATCATTTCCTATGAAAGTATGATTTAGACTTCCAGTCTAAGGTCATGTTCCCTGCAGACCGTGGAAAAGTTGCTGCGTCAGTGGCTTCAGGGATGACTGTTGAACTTTGACCTTTATGAGCTGCAGTCTCATGACTGAGCGAGTGCCTAAGCTTCAGTCTGACGCCGGTGGAGATGCATGGAGCGACCATCATCCCAGGGCTGAATGAAGACTTATACTACACCAACTTGGGCCTGAAACAGCAGAGCATTGTTCTGGACAACACAGTACCCATGTTTTTATCTCTGATTTGACAGTGCCAACTGAGCGCTCAGAACGACTCAGATATTTTCTAACTGCCTGTTGACCGATGATGTGAAACCTTTGTATGATGCTATGATGACCTACTCATCCATCATGATTTTGTGTAAATAATGCAATGTTTCTTTACCAAAGGTGCAACTGCTTCATGCATGCTTCCATGTTTGCAGTGGAAGCCCGATTTTGCCCATGCAAATCTAGaaagacttttataatgcaGTTTCATGTTAATTACTGAACAATTTTGAACTGAATAACAGTACTTAGTTTGATGAGTGTAAAGCACTTAATTCATTATCATTGAGCATCCCAGCGTAACTCAAGAAGTAACGAGATCAGTAAAGGGGATGGGAACACTGTGTCACAATGTGAAGTAGAGTTCCTCTCGACTTAAAtcgataattcacccaaaaatgtcttttttttaattttgctgtttttcctagcttgcttttttctttggaacatattttcataaatggaTTTTGCCCATGCTGCGGAATCTGTGGTCACCAAAATTGTTCAAAACATAtgttggtcccactttatattaggtgaccttaactactgtgtatttaatttgaattaatcatttgatacaatgcacttactgtgtacatacatgtttttacatggaacttgtatttttaaaatacctatatgtagttacacctgtaattaatttttgtaattatatttgtatatacaaaGTTGACCTATTCCTTACACTTTAACCTACCCGTACCTATATCCCACCttaatagcagcaaaagtgttttgcaaaacaatatgaccacaataagtACACTGTACTTATTTATTGATGAaggtacatagtagttaaggccccTCGATATAAAGTGCGACCCATCTTTTAGGGTCAGGTTTAGAACAATGTGAAAGAGTGAATTAACATaacttacatttttgggtgaaatgtcCCTTTAACCTAAAGCGTGCTAGATAAGTCAATTCTAATCTTGAAACAAAAACCATAAAAGCAGCTGCTATTTTGGATATCAAAGTGCTTTTTGTGGCACAGCTACTCAGTCCAGCTCTGCGCATTTATGACAAGATTTCAGCAGTGTtgaattactatttttttccttcagtaaGCTGAGAGAGGATTTGAGCTTGAGACTctgtttcaactgaaaacaGTTACttgtataaaatgcataaacttTTAATGCTTGTATTGAGTGAATTGGAGTCTTTTACCCTCACATTATATGGCATCGACTCCCTCTAGTGTCCTTAATGCATTTTGAGTcaagaaataaatatgtgaaggGCTGTGTGGCCCTTTGGTACCa
>XM_043235798.1
CGACAATGATGCGTATTTGCTGTATCCGCACTACATTACCCACAATCCTCTTGTATGCGCGTCTGGGTGTAAGAGAAAAAGCTTAAAATTGGACCATCTGTAGACTTTGATTTAGCATCAATGGCTGCAGCAGATATTTTCGACAGGGCTTTGCTGTATTATGAGCTGTAGTAAACCATCGCGCTTCAACCGATTCTCAGGAGGATCTGTGGTAGGTGCCGCTAACACTATACCCTCACCTGACATCAGCAAACGGACCAAAATGGAAGCTAGTTTTGGATCCACTTTTCCAGCAGTCCCTCAAGTAGCAAAAGACACTAATTACAAACAGCACCGTAGAACCCCTTCATCCTCCAGCACTCTGACCTACTCCCCTCGTGACGACGATGATGGCATGCCGCCCATTAGTACCCCTCGTCGCTCAGACTCTGCCATCTCGGTTCGCTCTCTGCACTCGGAGTCCAACATGTCGCTGCGCTCCACCTTTTCCCTGCACGAGGAAGAGGAAGACACAGAGCCACAGGTGTTTGCGGAGCAGCCCTCGGTTAAGCTTTGTTGCCAGCTGTGCTGCAGCGTGTTCAAGGACCCCGTCATCACCACCTGCGGACACACGTTCTGCAGGCGATGTGCCTTGACCTCAGAGAAATGCCCCGTGGACAATTCCAAGCTCACAGTGGTTGTGAATAACATAGCGGTGGCCGAGCAAATTGGAGAGCTTTTCATCCACTGCAAGTACGGCTGTCGGCCAGCTGCCTCGGGCAAACCCGGTGCCTTTGAGGTTGACCCACTTGGCTGTCCTTTCACCATCAAGCTAAGCACCAGGAAAGATCATGAAGTAAGCTGTGACTACAGACCTGTTCGCTGTCCCAACAACCCCAACTGCCCTCCATTGCTCACCATGAACCTGGAGGCCCATCTGAAAGAGTGTGAACACATTAAGTGCCCTCACTCTAAATATGGTTGCACCTTCATCGGGAATCAGGACACGTATGAGACTCATCTGGAGGTGTGTAAGTTTGAGGGCCTGAAAGAGTTTCTCCAGCAGACGGACGACAGATTTCACGAGATGCAGGTGACACTGGCGCAGAAGGACCAGGACATCTCGTTCCTGCGCTCCATGTTGGGCAAACTCTCAGAGAAACTAGACCAGCTGGAGAAGAACTTGGAGCTGAAGTTCGATGTGTTGGATGAGAACCAGAGTAAACTCAGTGAAGATCTGATGGAGTTCAGACGAGATGCTTCCATGCTGAATGATGAACTGTCTCACATCAATGCCAGGCTCAATATGGGTATACTGGGCTCCTATGACCCCCAGCAAATCTTCAAATGCAAGGGTACTTTTGTGGGCCACCAGGGTCCGGTGTGGTGTTTGTGCGTCTACTCCACTGGTGATCTTCTCTTTAGTGGGTCTTCAGATAAGTCCATCAAGGTTTGGGACACATGCACCACATATAAGTGCCAGAAGACCCTTGAGGGCCATGATGGCATAGTGTTGGCATTGTGCATTCAGGGAAACAAGCTTTACAGTGGGTCAGCTGATTGCACCATTATTGTTTGGGATATCCAGACCCTGCAGAAAGTGAACACCATCCGGGCACATGACAACCCAGTGTGCACTCTGGTGTCCTCGCACAACATGCTATTCAGCGGCTCTCTGAAAGCCATTAAGGTGTGGGATATTGTGGGCACGGAGCTGAAGCTAAAGAAGGAGCTAACTGGCTTGAATCACTGGGTTCGAGCTCTGGTTGCTTCTCAAAATCATCTGTACAGCGGATCTTATCAAACCATAAAGATCTGGGACATTCGTTCTCTGGAGTGTGTCCATGTGCTCCAGACCTCTGGAGGCAGTGTGTACTCCATTGCGGTCACCAATCACCATATAGTTTGTGGCACCTACGAGAACCTCATTCACGTTTGGGACATAGAGTCTAAAGAGCAGGTGCGGACGCTGACGGGCCACGTGGGCACAGTGTATGCCCTGGCTGTCATCTCAACCCCCGATCAGACCAAAGTGTTCAGTGCCTCCTATGATCGCTCTCTCAGGGTGTGGAGCATGGACAACATGATCTGCACCCAGACTCTGCTGCGGCACCAGGGCAGCGTGACGGCGCTCGCTGTGTCCAGAGGAAGACTCTTCTCTGGAGCTGTAGACAGCACTGTAAAGGTGTGGACATGCTAAGTGTGACCACTAATCGTTATTAGTTGTCAACATGTTGAGTAATGTCTTTCTAAACTCCTCGAACTCAGAAACCACATGGACTCTGATGCACAGACTTAAAGTATGAATAAGAATATTATTCAAGAAAACATGCATTGGaccagaaatgtttttattctgtacccTATGGACTTGGGTGTCTGTCCCTTGTGAATTTTGCAGTAAACCGTTAGGTAAAGAGGCCTAGCTTGACGCGCTGGATGGATGATGCTCATTTACTTTCCTCTTACCAGACATCTTTTGACAGCAAACAGAACCTCCAAACCTTCAGTGTTTATGAAGACCCAGCAGACAGCCAACATTCATCATAAACATGACGGCACtgtattttatacacacacatgcgtgATCATTTCCTATGAAAGTATGATTTAGACTTCCAGTCTAAGGTCATGTTCCCTGCAGACCGTGGAAAAGTTGCTGCGTCAGTGGCTTCAGGGATGACTGTTGAACTTTGACCTTTATGAGCTGCAGTCTCATGACTGAGCGAGTGCCTAAGCTTCAGTCTGACGCCGGTGGAGATGCATGGAGCGACCATCATCCCAGGGCTGAATGAAGACTTATACTACACCAACTTGGGCCTGAAACAGCAGAGCATTGTTCTGGACAACACAGTACCCATGTTTTTATCTCTGATTTGACAGTGCCAACTGAGCGCTCAGAACGACTCAGATATTTTCTAACTGCCTGTTGACCGATGATGTGAAACCTTTGTATGATGCTATGATGACCTACTCATCCATCATGATTTTGTGTAAATAATGCAATGTTTCTTTACCAAAGGTGCAACTGCTTCATGCATGCTTCCATGTTTGCAGTGGAAGCCCGATTTTGCCCATGCAAATCTAGaaagacttttataatgcaGTTTCATGTTAATTACTGAACAATTTTGAACTGAATAACAGTACTTAGTTTGATGAGTGTAAAGCACTTAATTCATTATCATTGAGCATCCCAGCGTAACTCAAGAAGTAACGAGATCAGTAAAGGGGATGGGAACACTGTGTCACAATGTGAAGTAGAGTTCCTCTCGACTTAAAtcgataattcacccaaaaatgtcttttttttaattttgctgtttttcctagcttgcttttttctttggaacatattttcataaatggaTTTTGCCCATGCTGCGGAATCTGTGGTCACCAAAATTGTTCAAAACATAtgttggtcccactttatattaggtgaccttaactactgtgtatttaatttgaattaatcatttgatacaatgcacttactgtgtacatacatgtttttacatggaacttgtatttttaaaatacctatatgtagttacacctgtaattaatttttgtaattatatttgtatatacaaaGTTGACCTATTCCTTACACTTTAACCTACCCGTACCTATATCCCACCttaatagcagcaaaagtgttttgcaaaacaatatgaccacaataagtACACTGTACTTATTTATTGATGAaggtacatagtagttaaggccccTCGATATAAAGTGCGACCCATCTTTTAGGGTCAGGTTTAGAACAATGTGAAAGAGTGAATTAACATaacttacatttttgggtgaaatgtcCCTTTAACCTAAAGCGTGCTAGATAAGTCAATTCTAATCTTGAAACAAAAACCATAAAAGCAGCTGCTATTTTGGATATCAAAGTGCTTTTTGTGGCACAGCTACTCAGTCCAGCTCTGCGCATTTATGACAAGATTTCAGCAGTGTtgaattactatttttttccttcagtaaGCTGAGAGAGGATTTGAGCTTGAGACTctgtttcaactgaaaacaGTTACttgtataaaatgcataaacttTTAATGCTTGTATTGAGTGAATTGGAGTCTTTTACCCTCACATTATATGGCATCGACTCCCTCTAGTGTCCTTAATGCATTTTGAGTcaagaaataaatatgtgaaggGCTGTGTGGCCCTTTGGTACCa

Function

symbol description
traf7 Predicted to enable metal ion binding activity. Orthologous to human TRAF7 (TNF receptor associated factor 7).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRAF7

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10646 TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235797.1 True 4185 mRNA 0.45 21 13796853 13808182
XM_043235798.1 False 4182 mRNA 0.45 21 13796853 13808182

Neighbor

gene id symbol gene type direction distance location
rpusd1 rpusd1,LOC107720093,LOC107654465,LOC107590456,LOC107688151 coding upstream 26908 13767191 ~ 13769945 (+)
LOC122339456 LOC107590441,LOC107721518,LOC107654452,LOC107719974,LOC107688138,LOC107601257 coding upstream 32481 13718936 ~ 13764372 (+)
cacng3b cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095,LOC108436978 coding upstream 113357 13649294 ~ 13683496 (+)
prkcbb prkcbb,LOC107601253,LOC107689613,LOC107710001,LOC107590404,LOC107752983,LOC107688094 coding upstream 163326 13532570 ~ 13633527 (+)
smarce1 LOC107590406,LOC107752998,LOC107601252,LOC107709999,LOC107689614 coding upstream 268335 13521215 ~ 13528518 (+)
crlf3 crlf3,LOC107688102,LOC107654479,LOC107721514,LOC107719981 coding downstream 80758 13888940 ~ 13902589 (+)
trnat-cgu NA coding downstream 105441 13913623 ~ 13913694 (+)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106 coding downstream 174072 13982254 ~ 13986772 (+)
dus1l dus1l,LOC107601270,LOC107654489,LOC107688109,LOC107590391 coding downstream 221323 14029505 ~ 14036025 (+)
zgc:86896 zgc:86896,LOC107654493,LOC107601274,LOC107721506,LOC107719989,LOC107590453,LOC105899990 coding downstream 249462 14057644 ~ 14062454 (+)
G19890 NA non-coding upstream 4298 13787833 ~ 13792555 (+)
G19788 nsfa,LOC107689618,LOC107709994,LOC107601245 non-coding upstream 353275 13409739 ~ 13443578 (+)
G19798 NA non-coding upstream 354704 13441686 ~ 13442149 (+)
LOC122341620 NA non-coding upstream 384935 13408320 ~ 13411918 (+)
G19780 NA non-coding upstream 433123 13362886 ~ 13363730 (+)
G19891 NA non-coding downstream 7171 13815353 ~ 13818222 (+)
LOC122342149 NA non-coding downstream 105744 13913926 ~ 13920269 (+)
G19963 NA non-coding downstream 132434 13940616 ~ 13943491 (+)
G20009 NA non-coding downstream 291991 14100173 ~ 14101904 (+)
G20057 NA non-coding downstream 340282 14148464 ~ 14150958 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other upstream 85988 13698537 ~ 13710865 (+)
si:dkey-204f11.64 LOC105898698 other upstream 681997 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 808940 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 1268050 12519837 ~ 12528803 (+)
G19326 NA other upstream 1283132 12511926 ~ 12513721 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 187779 13995961 ~ 14002378 (+)
G19973 NA other downstream 241308 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 310285 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 312003 14120185 ~ 14123128 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other downstream 447308 14255490 ~ 14273309 (+)

Expression


Co-expression Network