RNA id: XM_043235798.1


Basic Information

Item Value
RNA id XM_043235798.1
length 4182
RNA type mRNA
GC content 0.45
exon number 21
gene id traf7
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13796853 ~ 13808182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGACAATGATGCGTATTTGCTGTATCCGCACTACATTACCCACAATCCTCTTGTATGCGCGTCTGGGTGTAAGAGAAAAAGCTTAAAATTGGACCATCTGTAGACTTTGATTTAGCATCAATGGCTGCAGCAGATATTTTCGACAGGGCTTTGCTGTATTATGAGCTGTAGTAAACCATCGCGCTTCAACCGATTCTCAGGAGGATCTGTGGTAGGTGCCGCTAACACTATACCCTCACCTGACATCAGCAAACGGACCAAAATGGAAGCTAGTTTTGGATCCACTTTTCCAGCAGTCCCTCAAGTAGCAAAAGACACTAATTACAAACAGCACCGTAGAACCCCTTCATCCTCCAGCACTCTGACCTACTCCCCTCGTGACGACGATGATGGCATGCCGCCCATTAGTACCCCTCGTCGCTCAGACTCTGCCATCTCGGTTCGCTCTCTGCACTCGGAGTCCAACATGTCGCTGCGCTCCACCTTTTCCCTGCACGAGGAAGAGGAAGACACAGAGCCACAGGTGTTTGCGGAGCAGCCCTCGGTTAAGCTTTGTTGCCAGCTGTGCTGCAGCGTGTTCAAGGACCCCGTCATCACCACCTGCGGACACACGTTCTGCAGGCGATGTGCCTTGACCTCAGAGAAATGCCCCGTGGACAATTCCAAGCTCACAGTGGTTGTGAATAACATAGCGGTGGCCGAGCAAATTGGAGAGCTTTTCATCCACTGCAAGTACGGCTGTCGGCCAGCTGCCTCGGGCAAACCCGGTGCCTTTGAGGTTGACCCACTTGGCTGTCCTTTCACCATCAAGCTAAGCACCAGGAAAGATCATGAAGTAAGCTGTGACTACAGACCTGTTCGCTGTCCCAACAACCCCAACTGCCCTCCATTGCTCACCATGAACCTGGAGGCCCATCTGAAAGAGTGTGAACACATTAAGTGCCCTCACTCTAAATATGGTTGCACCTTCATCGGGAATCAGGACACGTATGAGACTCATCTGGAGGTGTGTAAGTTTGAGGGCCTGAAAGAGTTTCTCCAGCAGACGGACGACAGATTTCACGAGATGCAGGTGACACTGGCGCAGAAGGACCAGGACATCTCGTTCCTGCGCTCCATGTTGGGCAAACTCTCAGAGAAACTAGACCAGCTGGAGAAGAACTTGGAGCTGAAGTTCGATGTGTTGGATGAGAACCAGAGTAAACTCAGTGAAGATCTGATGGAGTTCAGACGAGATGCTTCCATGCTGAATGATGAACTGTCTCACATCAATGCCAGGCTCAATATGGGTATACTGGGCTCCTATGACCCCCAGCAAATCTTCAAATGCAAGGGTACTTTTGTGGGCCACCAGGGTCCGGTGTGGTGTTTGTGCGTCTACTCCACTGGTGATCTTCTCTTTAGTGGGTCTTCAGATAAGTCCATCAAGGTTTGGGACACATGCACCACATATAAGTGCCAGAAGACCCTTGAGGGCCATGATGGCATAGTGTTGGCATTGTGCATTCAGGGAAACAAGCTTTACAGTGGGTCAGCTGATTGCACCATTATTGTTTGGGATATCCAGACCCTGCAGAAAGTGAACACCATCCGGGCACATGACAACCCAGTGTGCACTCTGGTGTCCTCGCACAACATGCTATTCAGCGGCTCTCTGAAAGCCATTAAGGTGTGGGATATTGTGGGCACGGAGCTGAAGCTAAAGAAGGAGCTAACTGGCTTGAATCACTGGGTTCGAGCTCTGGTTGCTTCTCAAAATCATCTGTACAGCGGATCTTATCAAACCATAAAGATCTGGGACATTCGTTCTCTGGAGTGTGTCCATGTGCTCCAGACCTCTGGAGGCAGTGTGTACTCCATTGCGGTCACCAATCACCATATAGTTTGTGGCACCTACGAGAACCTCATTCACGTTTGGGACATAGAGTCTAAAGAGCAGGTGCGGACGCTGACGGGCCACGTGGGCACAGTGTATGCCCTGGCTGTCATCTCAACCCCCGATCAGACCAAAGTGTTCAGTGCCTCCTATGATCGCTCTCTCAGGGTGTGGAGCATGGACAACATGATCTGCACCCAGACTCTGCTGCGGCACCAGGGCAGCGTGACGGCGCTCGCTGTGTCCAGAGGAAGACTCTTCTCTGGAGCTGTAGACAGCACTGTAAAGGTGTGGACATGCTAAGTGTGACCACTAATCGTTATTAGTTGTCAACATGTTGAGTAATGTCTTTCTAAACTCCTCGAACTCAGAAACCACATGGACTCTGATGCACAGACTTAAAGTATGAATAAGAATATTATTCAAGAAAACATGCATTGGaccagaaatgtttttattctgtacccTATGGACTTGGGTGTCTGTCCCTTGTGAATTTTGCAGTAAACCGTTAGGTAAAGAGGCCTAGCTTGACGCGCTGGATGGATGATGCTCATTTACTTTCCTCTTACCAGACATCTTTTGACAGCAAACAGAACCTCCAAACCTTCAGTGTTTATGAAGACCCAGCAGACAGCCAACATTCATCATAAACATGACGGCACtgtattttatacacacacatgcgtgATCATTTCCTATGAAAGTATGATTTAGACTTCCAGTCTAAGGTCATGTTCCCTGCAGACCGTGGAAAAGTTGCTGCGTCAGTGGCTTCAGGGATGACTGTTGAACTTTGACCTTTATGAGCTGCAGTCTCATGACTGAGCGAGTGCCTAAGCTTCAGTCTGACGCCGGTGGAGATGCATGGAGCGACCATCATCCCAGGGCTGAATGAAGACTTATACTACACCAACTTGGGCCTGAAACAGCAGAGCATTGTTCTGGACAACACAGTACCCATGTTTTTATCTCTGATTTGACAGTGCCAACTGAGCGCTCAGAACGACTCAGATATTTTCTAACTGCCTGTTGACCGATGATGTGAAACCTTTGTATGATGCTATGATGACCTACTCATCCATCATGATTTTGTGTAAATAATGCAATGTTTCTTTACCAAAGGTGCAACTGCTTCATGCATGCTTCCATGTTTGCAGTGGAAGCCCGATTTTGCCCATGCAAATCTAGaaagacttttataatgcaGTTTCATGTTAATTACTGAACAATTTTGAACTGAATAACAGTACTTAGTTTGATGAGTGTAAAGCACTTAATTCATTATCATTGAGCATCCCAGCGTAACTCAAGAAGTAACGAGATCAGTAAAGGGGATGGGAACACTGTGTCACAATGTGAAGTAGAGTTCCTCTCGACTTAAAtcgataattcacccaaaaatgtcttttttttaattttgctgtttttcctagcttgcttttttctttggaacatattttcataaatggaTTTTGCCCATGCTGCGGAATCTGTGGTCACCAAAATTGTTCAAAACATAtgttggtcccactttatattaggtgaccttaactactgtgtatttaatttgaattaatcatttgatacaatgcacttactgtgtacatacatgtttttacatggaacttgtatttttaaaatacctatatgtagttacacctgtaattaatttttgtaattatatttgtatatacaaaGTTGACCTATTCCTTACACTTTAACCTACCCGTACCTATATCCCACCttaatagcagcaaaagtgttttgcaaaacaatatgaccacaataagtACACTGTACTTATTTATTGATGAaggtacatagtagttaaggccccTCGATATAAAGTGCGACCCATCTTTTAGGGTCAGGTTTAGAACAATGTGAAAGAGTGAATTAACATaacttacatttttgggtgaaatgtcCCTTTAACCTAAAGCGTGCTAGATAAGTCAATTCTAATCTTGAAACAAAAACCATAAAAGCAGCTGCTATTTTGGATATCAAAGTGCTTTTTGTGGCACAGCTACTCAGTCCAGCTCTGCGCATTTATGACAAGATTTCAGCAGTGTtgaattactatttttttccttcagtaaGCTGAGAGAGGATTTGAGCTTGAGACTctgtttcaactgaaaacaGTTACttgtataaaatgcataaacttTTAATGCTTGTATTGAGTGAATTGGAGTCTTTTACCCTCACATTATATGGCATCGACTCCCTCTAGTGTCCTTAATGCATTTTGAGTcaagaaataaatatgtgaaggGCTGTGTGGCCCTTTGGTACCa

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29624 lncRNA upstream 4298 13787833 ~ 13792555 (+) True G19890
TU29615 lncRNA upstream 91451 13698574 ~ 13705402 (+) False rbbp6
TU29485 lncRNA upstream 353275 13409739 ~ 13443578 (+) False G19788
TU29625 lncRNA downstream 7171 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 105744 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 132434 13940616 ~ 13943491 (+) True G19963
TU29750 lncRNA downstream 188288 13996470 ~ 13997081 (+) False slc16a3a
TU29788 lncRNA downstream 291991 14100173 ~ 14101904 (+) True G20009
XM_043233953.1 mRNA upstream 26908 13767191 ~ 13769945 (+) True rpusd1
XM_043233954.1 mRNA upstream 26908 13767191 ~ 13769945 (+) False rpusd1
XM_043233951.1 mRNA upstream 32481 13737898 ~ 13764372 (+) False LOC122339456
XM_043233930.1 mRNA downstream 80758 13888940 ~ 13902589 (+) True crlf3
XM_043235136.1 mRNA downstream 174072 13982254 ~ 13986772 (+) True scpep1
XM_043228898.1 mRNA downstream 187779 13995961 ~ 14002378 (+) False slc16a3a
XM_043228897.1 mRNA downstream 188704 13996886 ~ 14002378 (+) True slc16a3a
XM_043235003.1 mRNA downstream 221323 14029505 ~ 14036025 (+) False dus1l
TU29613 other upstream 94500 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 808940 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 908792 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1268050 12519837 ~ 12528803 (+) False gtpbp1
TU28787 other upstream 1283132 12511926 ~ 12513721 (+) False G19326
unassigned_transcript_286 other downstream 105441 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 241308 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 310285 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 447308 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 726997 14535179 ~ 14615408 (+) True G20148

Expression Profile