RNA id: XM_043233953.1


Basic Information

Item Value
RNA id XM_043233953.1
length 1928
RNA type mRNA
GC content 0.44
exon number 6
gene id rpusd1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13767191 ~ 13769945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAACGTTTCAGGGAGTCGGTTCGTTCGAACAGGTAATTTAAAAGAATCGGCTCGAAAAGAATCAAATTCATTGAAAAGATCGGACTAGAAAGAATTGACTATTTCACAAatcaaaattagaaaaatgtctgcgtgttttatatataaattcctAAGTTATATTTAACCGATTGATTTTGTAATTAGaccatttaatgtaattattatttagacatttaataGGACCATTTAATAATAGTGCGAAATAGTTGACGTAAtgaggcttttattttgaaacgaTTATGTCCTCCAGTCACGCATGGGATCTCTTACAGAGATGGTCTATCAAACTAAGTTTATTTAACCTACGCTATTAGCTAGAAACGAAAAGCAGTcagtgttatattttttttgcattgaataAAATGCGTGCGATGTAATGCTTCCTCTGAAGGAGAAGGTTTGCTCCGCGCGGAGGAAAGATAAACAGATCACTGGATGTAAATCCACATCCAGCGTGCTGCACAACAACAGGGCTAAATAACACACGCACGGCGGTAACGAGACAAACAGCATGCGCTAAATGTGCCTTTACTGAACAAACACCACTTACCTTGCTTCGCACGAGAAGGGGAGCATGGAGCCCGCGAGCCTGGAGAACTTGTGTGTTTTGTACCACAGCGCAAACTACATAGTTGTCAACAAACACTGGGATATTCGTATTGACAGCAAGATGTGGTACGAGAAGCAAACTGTCCAGAGTCAGCTGAAGCACCGCTTCCCAGAGCTCGCAGATCCTGGCACCTACTACGGCTTCAGGTTTTGCCATCAGCTGGATTTCTCTACCAGTGGTGCTCTGTGTGTAGCGCTGAACAAGGCAGCAGCAGGACATGCATACCGCTGTTTTAAGGACAGACTTGTTACCAAGGCTTATCTCGCTCTGGTCCGTGGAACTGTGGCCGAGGAAAAACTGACCCTAGACTTTGCGATCGGCAAGAACACAACAGAGGGCAAGACCCATATGATGTGTACTGAAGGAACAGAAGGTTGTGAGAATCCCAAGCCCTGCCAGACAGAGCTGACAGTTTTAGAGTATGGAGAGTATGATGGCGATCCAGTCACGAAAGTGCTTCTGCAGCCTCTGACAGGACGCACGCACCAGCTCCGAGTTCACTGCAGTGCCATCGGTCACCCCATAGTGGGAGACTACACTTACAGTCTCCGCACAGACAGTGCTCCGTATCGCATGATGCTGCACGCCTACTTCTTGCACATCCCTCTAGCGAACGAACCCATCCACGTCACAGCCCCGGACCCCTTTATACCCACCCTCGACTCCAAATGGGCACCGCAGAGATGCGTGAACGTTCTGGAGGACCTACTGAAGAATATTTTGACAAAACCACAAACTGAAATCCGGGACGAACCGGAGCCAGCGCACAGGAGGAGCAGCCCAGTGGAGAGCGAGGAGCAACAGGCGCAGTGTCAGCAGTGGTTGTGTGAATGGAATCTGGACTGAGGAACGTTTACCTTGTTTCACCAGAACCGTACCGAAGCAACACTGCAGCGTCCCCAGCTTTACAGAgtacacttttctttaaatgGTAGCGGGTAGCCAGCACTGCTCAATAACAGTATAGAGCAAGAACAGAACAGAAGGCATAAAGGCTGatctttttatcaatttaaaagaCTGTacgcttttattaatttacattaccattcaaaagtttggggttgatTAGGGTTTgcaaagttttactttttaaagaaagtcaATTGCTCACCAAGTCCGATTTTATACGATCCAAAATGCggtaaaaattctaatattgtgaaatattcgTACAATTTCAAGGAATTGTTTTccttttgaatacatttttaaaatgcgattaatcactgaatacataatacattaggcactgaataaaattaatcaaattca

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29615 lncRNA upstream 61789 13698574 ~ 13705402 (+) False rbbp6
TU29485 lncRNA upstream 323613 13409739 ~ 13443578 (+) False G19788
TU29498 lncRNA upstream 325042 13441686 ~ 13442149 (+) True G19798
TU29482 lncRNA upstream 327865 13435894 ~ 13439326 (+) True G19788
XR_006250477.1 lncRNA upstream 355273 13408320 ~ 13411918 (+) True LOC122341620
TU29624 lncRNA downstream 17888 13787833 ~ 13792555 (+) True G19890
TU29625 lncRNA downstream 45408 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 143981 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 170671 13940616 ~ 13943491 (+) True G19963
TU29750 lncRNA downstream 226525 13996470 ~ 13997081 (+) False slc16a3a
XM_043233948.1 mRNA upstream 2819 13718936 ~ 13764372 (+) False LOC122339456
XM_043233946.1 mRNA upstream 2819 13737897 ~ 13764372 (+) False LOC122339456
XM_043233947.1 mRNA upstream 2819 13737897 ~ 13764372 (+) True LOC122339456
XM_043233945.1 mRNA upstream 2819 13737897 ~ 13764372 (+) False LOC122339456
XM_043233949.1 mRNA upstream 2819 13737897 ~ 13764372 (+) False LOC122339456
XM_043235797.1 mRNA downstream 26908 13796853 ~ 13808182 (+) True traf7
XM_043235798.1 mRNA downstream 26908 13796853 ~ 13808182 (+) False traf7
XM_043233930.1 mRNA downstream 118995 13888940 ~ 13902589 (+) True crlf3
XM_043235136.1 mRNA downstream 212309 13982254 ~ 13986772 (+) True scpep1
XM_043228898.1 mRNA downstream 226016 13995961 ~ 14002378 (+) False slc16a3a
TU29613 other upstream 64838 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 779278 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 879130 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1238388 12519837 ~ 12528803 (+) False gtpbp1
TU28787 other upstream 1253470 12511926 ~ 12513721 (+) False G19326
unassigned_transcript_286 other downstream 143678 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 279545 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 348522 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 485545 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 765234 14535179 ~ 14615408 (+) True G20148

Expression Profile