G162102


Basic Information

Item Value
gene id G162102
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 11119706 ~ 11149416 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU240009
aaaaaaattcccTGCAGCTCCCGAAAAGACATTCTGTGAACCAGCCATTGTTCATCAGCAAAAATGCAGGTCAACCAGAAAAGTACGGTAACTAGCGTACGTCTTTTCAACGAGGATACCGCAATTAACAAGCTCCAACTGGATGTCTCCTGTGggcattcattaaaaaacgATTTAGCATTTCGGTAGGATTTTTTTGTAAGACAACGATTCGTAATTGATAACATGCTATGAAGTACCACGCGAAGACATTCCAACGACCTCAGCATTAAAGTTAAGCGACGGAGCCCTGGCAGGCGCGAGGCGTGTTCCTCTCAGAGCAGCGGGATTGTCACACGCAGCTTCTCTCACACTCCCGTCGAGTTCACGGAGCGTGATAGAACCGTCACCCGCTCATCCCGCTCCGAAACCAGCAAATAACCGTCCTGAGCCACAGTGGAGTCTGACTGAGAACTACCGCCTGCCGCCGGCGTCTACAGCAGCCGAGGGCGAATGACTGTAGAGGCAGTTTAGTCTCGGAGCGCTCAACAGGGTGCTGAGAGAGAAGAACCGGACCGGGCGGAACCAGCCGAGACACCGACGCTGACACACACATCCATCACACCGAAGAAACCAAATGAAGGAGAAGAATTTAATCGAAACGGCCAAAATGCAGGGAAATGTGCTGCGTTCTTTTGTATAACAACGACCCAGCACCGAAATACAATCCAGCGCTGCCTCCGTTCTTCGCGAAAGCTGGATAAAAACACGCACAGGAAACAAAAACCTTGAAGAAATGATATAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240009 True 787 lncRNA 0.49 2 11119706 11149416

Neighbor

gene id symbol gene type direction distance location
arhgap21a arhgap21,LOC107570046,LOC106534829,LOC107755714 coding downstream 254008 10863581 ~ 10865698 (-)
enkur enkur,LOC107588018,LOC107574706,LOC107664643,LOC107655791,LOC107664642 coding downstream 457280 10659883 ~ 10662426 (-)
prtfdc1a unm_sa821,prtfdc1,LOC107755703,LOC107588087,LOC107664644,LOC107655792 coding downstream 459964 10649767 ~ 10659742 (-)
LOC122329874 LOC107709776,LOC107664664,LOC107588019 coding downstream 473160 10568378 ~ 10646546 (-)
LOC122329576 LOC107755704,LOC107655793,LOC107579495 coding downstream 557960 10556321 ~ 10561746 (-)
actr3b actr3b,LOC107550018,LOC107664653,LOC106590428 coding upstream 117565 11266981 ~ 11283509 (-)
galnt11 galnt11,LOC107664652,LOC107655804,LOC107742260 coding upstream 250573 11399989 ~ 11415573 (-)
atp6v0a1b atp6v0a1b,LOC107742255,LOC107550020,LOC107664669,LOC107755711,LOC107557242,LOC107655803,LOC108426558 coding upstream 269603 11419019 ~ 11436687 (-)
syt5b syt5b,LOC107664666,LOC107742254,LOC107550022,LOC107557240,LOC108426543,LOC103029888 coding upstream 305809 11455225 ~ 11460828 (-)
LOC122330202 LOC101886557 coding upstream 343628 11493044 ~ 11493961 (-)
G162081 NA non-coding downstream 565659 10553498 ~ 10554047 (-)
G162020 NA non-coding downstream 673279 10446039 ~ 10446427 (-)
LOC122329558 NA non-coding downstream 778343 10328669 ~ 10341363 (-)
G161985 NA non-coding downstream 825548 10290175 ~ 10294158 (-)
G161981 trpc1,LOC107687523,LOC107588031,LOC107739119,LOC107675135,LOC107758253 non-coding downstream 905610 10211151 ~ 10214096 (-)
G162193 NA non-coding upstream 337514 11486930 ~ 11494948 (-)
G162204 NA non-coding upstream 366422 11515838 ~ 11518808 (-)
G162218 NA non-coding upstream 377366 11526782 ~ 11528934 (-)
LOC122329540 NA non-coding upstream 796604 11946020 ~ 11970270 (-)
G162349 NA non-coding upstream 858390 12007806 ~ 12008305 (-)
dpp6a dpp6a,dpp6,LOC107755713,LOC107664663,LOC107655790 other downstream 109458 10666511 ~ 11010248 (-)
zgc:174877 zgc:174877,LOC107687531,LOC107709772,LOC107588023 other downstream 661230 10451559 ~ 10458476 (-)
myo3a myo3a,LOC107687530,LOC107675224,LOC107739129,LOC107758395,LOC107570047 other downstream 683243 10366173 ~ 10436463 (-)
G161992 NA other downstream 833098 10280797 ~ 10286608 (-)
G161893 LOC107563058 other downstream 1186904 9931295 ~ 9932802 (-)
G162152 LOC107550009,LOC107709778 other upstream 202645 11352061 ~ 11352859 (-)
txndc5 txndc5,LOC107730007,LOC107678545,LOC107557239 other upstream 432716 11582132 ~ 11619080 (-)
mppe1 mppe1,LOC107726146,LOC107702491,LOC105030507 other upstream 1107366 12256782 ~ 12304689 (-)
LOC122329483 jph1a,jph1,LOC107596049,LOC107758817,LOC107740042,LOC107589924,LOC107657819,LOC107693808 other upstream 1685362 12834778 ~ 12888181 (-)
G162538 neto1l,LOC107727239,LOC107589957,LOC107662554,LOC107657816,LOC107741667 other upstream 2199838 13349254 ~ 13350231 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G469773 NA misc CI01000327 null 692363 ~ 1001575 (+)