prtfdc1a (unm_sa821,prtfdc1,LOC107755703,LOC107588087,LOC107664644,LOC107655792)


Basic Information

Item Value
gene id prtfdc1a
gene name unm_sa821,prtfdc1,LOC107755703,LOC107588087,LOC107664644,LOC107655792
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 10649767 ~ 10659742 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226518.1
GAAGCgtaaaattgtactttttttctctctcgttgAATATCGTAAATATCAGAAAATATACATCGTGTTGATCAGTGGTAACTTTATTACAGTGTAACGTTATACACTTGCCAGGACAAACATTGTAAGACTTATATTACCGTAGCATTCAAATTCAGAGTATTTCagaaaattcaaaacaataagcGTGAATGAGATTCTCCAATAATGAACAACATGATCTAATGTGATATCTAACGTGCCTATGTCTCTGAAAAACGAGCATTTGGTTAAACACCTCCCACTCTGTTTACTCGTGTTAAAAGGGTGGGTGCACAAACGTGTGGTCCTCTCTCAGTAAGTATCACAGTTTGATTCACTCTCGCTCATACGAGGGCCGACATGGCAGCTGAGCGGAGAAAAGAACCAGGCGTTGTGATTGAAGATGGCTGGGCGGGTTACAGTTTGGAGCTGTTTAATTATCCAGAGCATTACCGGGGCGATCTGGAGTGTGTGTACATCCCTCATGGAGTCATTATGAACAGGATTGAGTGTCTGGCCAGAGACATTCTTGAAGACATTGGACATGATGATCTGATGGTTCTTTGTGTTCTGAAGGGAGGATACAAGTTCTGTTCTGACCTGGTGGAGTCGATTAAAGCTCAGAGCCGCAGTGCCAACAGAAGACTGACCACCAGAGTAGAGTTCATCCGCTTCAAGAGCTATCTGAATGACCAGTCCACTGAAGATATGCACATCATTGGACCAGATGACCTCTCCGTGCTGAAAGGAAAGAATGTCTTGATTGTGGAGGCAATAGTGGACACAGGAAAGACCATGAGAGCCCTTCTACAGCACGTGGAGACGTTCCAGCCCAAAATGGTTAAAGTTGCAGGGCTGCTGGTGAAGAGGGTTCCTCACGGAGCAGCAGAGCTCCCAGATTATGTTGGATTTGTCATTCCTAATCATTTTGTGGTGGGTTACGCTCTGGACTACAATGAATACTTCAGAGACCTCAATCACATCTGCGTCATCAGTGAGACGGGGAAACAGAAATATAGAATTTGACGAAATTCCTCTTTTCGAGAGGAATGGACATTTATGTTACCAGAACAGACACAAGATTATAGCGTTCTCAAATCAGAGAGCTGATATCTGCAACTGACATGCtaaattttgtttgaaatattatataatatattttgcatgaattGGGTCACACCGCAATACTAACATGATATGATGCGGAAATCAGACTTACcgtgtgatattttatatgctGTATACGAACCCAGCTGTTCGTTTTTTGTCCTATTTAAGAGGTATTTGTTTGACAGACCATCCATGCCACTGAAGACATCTCATACTTTTCAAACGTACAAAATGCTGGCTGGTTTGGTGATGACAACTCTTCGGCCAACTTTCAATCTCTTCATTGTTTTTACGAATGTTTGATATTGCAATAGTTCCTTGTTAATAAAAGATATTCAGAGATTTATTGACGTCTTTGCAACAGACAGATATTTTTAATCTGTTGAGGAGACCTTACAGATTGACAGTATAAACGAGTTTTATATTCTTCCATCCATTCCATGGAAACTGAAGTCTATCCCAGCATCTCGGGATTtaagaaaaagaacattttgaacagaatggaaaggtgtacattttttttcagagacTACAGAAGATTTAATGGTGCTAGAAATAGGACAAGTTCAGAGGTCTTATGGAGTCCATTACTTGACACACCAGAGATGATGAAAACATGAAAGGAACGTATACAATATTGGTGGTTTTAATGTTGAAGATGGTCAGTGAATAAAATGGATAAAACCAGTACAGCTAATGTTActtaaggacatcattaaagcAAGCAATGCCTTGAGTGCTGATGCCTTCTACAAAGGACACAGAAAATcatgtattaatgtttaaaacacaatgacgacaaacaaacaaataaataatacatgccTTCAGCTTTTTTGTTGGGTTCCAGAAAGATGTATTTGCGCACTACAAAGTGGTGCTAAATAAAGAACATGTGAAAAGCCCTGAATAAAGATGATTTATTAGAAATGTCTATTGAAACTTTGGATGGCGCTGCTTTTCCCAGTGTTTTGCCTGGGGTTTGACCTCTTTGTCAATGTACAACCAGACAAAACCAACATCAGGGGTTGATTTGCTTTACAACCTGCTGTGGTTATCTCACATCTCAGACAAGCAATGAATTCAGTGGAAATTTACTGCGCTAATACAGAACTCAAAGCTGATGTTCCCTGAGAATCCTGAAGAAAATCATTTCAGCTCATCTGCTTTGGATCTGCTGTCTTACAGGCAATCCGCTTGAAAAGGCTGGCTCTTGAATTCAATAAGTAAGCAAAGCGGATGCTAACACCTCCAAGGGCGTTAGATAACAGAGCCCAAGGCGACCTTGCAATGATTCTTCCTATATGTGGCATTATATCGGAAACTATGGACTAATCCACagtcaaaaaattattttttgagtCTAGTTATGATATTGTCCTACATGGTTGGTTTAAATTGTAGAGTGAGAGCTGTTTGTGCCTCACACTGAGCTTTCCATGACTCAGTCTGGGCGCCAGCCGGGTACAAATGCCAACAGCCGCCATCTGCCATCAGTTACTGCACCTCATGACTGGAGAATGCAATGCTgcactaaaaacacaaaacggTTTATTTCATTAGATCAGTCAGTGGGTCATAACAATGCATGAAGATAGTGCATTATTATTTGTCTTACAAAAGACTGTGAGGCTTATTTGTGTTTAGAGATCCCATTAAATGGTCTGACGAAAGCAATTTTCTGTTGTGTGTTTCCAGTTCAGACAAATTGCAGGCCTGTGTGATTATCTTCtccttcttttttaatttaatgtttgaGACTAGCTGCGCTTGGTGTGGGATTAAAGAGCATTCCAAAGAAAGACCAGAAGACCCCTCAACATGGAGGGACATCTCACTATTGCCATCTATATACAAAGTCTTTATGAAGCGCCTGCTTTCAAGAATACTACCTCGGCTGGTTGATGCTGGAATTCTGtccaacaaacaaaacgctTACACTGAGCCACAAGGCACAAATGAGCTCAAAGCTGCACAAATCTGCTAAGCTTTATATTGTATTCCTTGACTTCAGGGATGCGTTTGGCATATCGCCACATAGAGTCGTGAATGATGCACTGGAAGAGATACAGCTCCCTAAGATCTATGTGGACATAATAAAAGACGTATATCGTGACTACTACCTTAGAGGTGATCTGTGGAAAAGACCTCACCGTAACGGTGCGACTTGAGGTAGGAATCAAAACTGGCTGTCCATGGAGCGCTGTAAACTTTATCATTGCAATAAACCAATGGCTATGCTGATGATGTGGCCGTCGCATCTCAAGCAGAATGGATCTCACTGAAGCATCGCTCTcgctgttcttttaaaagtgCAAGCAATATGAGACATTCCCCACCATTCCCCTCTCTGTATGCTTCATGACATCTGGAGTCTGTAGCCCACATTATGAACAGTTGTTCATCACTTAAAGGACTCTATACTGCCAGACATGACAGACCTGTGGACCTCATTGCTGCTCAGATTCCCTGCATGGATGATAAGCAGATCTTTAAACATACTACTGTACAATCTGAATGGTATAATTCACCTGCAAAAGCTTTTTTAGGAATTGCTAATACACCGGATCTCTCAGAATGGCAAAACCTTTACACTATTTGAATAGTTTGACTTGTTTATGAAATACCAGTCATTGATATATATCATAGAGAAACTTGGGTACAAATGTCAACCTATTGTGCTATTGTTCATTAGTCTGGTCCACGTACATAGGCTGGTGATCCGTGGACTTTGCATGGGGGGGTCTATCTAACACAAGGGCCAGACAGTTGGCAAAGTACTGTTCAGTTTCAGCAATTATAAGAAGCAtgtttatttggaaaaatacaA

Function

symbol description
prtfdc1 Enables protein homodimerization activity. Predicted to be involved in purine ribonucleoside salvage.

NR:

description
hypoxanthine-guanine phosphoribosyltransferase-like isoform X1

GO: NA

KEGG:

id description
K24196 PRTFDC1; phosphoribosyltransferase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226518.1 True 3961 mRNA 0.40 9 10649767 10659742

Neighbor

gene id symbol gene type direction distance location
LOC122329874 LOC107709776,LOC107664664,LOC107588019 coding downstream 3221 10568378 ~ 10646546 (-)
LOC122329576 LOC107755704,LOC107655793,LOC107579495 coding downstream 88021 10556321 ~ 10561746 (-)
gpr158a gpr158a,LOC107709775,LOC107588021,LOC107570048,LOC107687544,LOC107675282 coding downstream 96558 10475173 ~ 10553209 (-)
anxa13 anxa13,LOC107588022,LOC107570049,LOC107709773,LOC107675241,LOC107758360,LOC108431991 coding downstream 184872 10458613 ~ 10464895 (-)
LOC122329611 LOC107687542,LOC107709774 coding downstream 199259 10447894 ~ 10450508 (-)
enkur enkur,LOC107588018,LOC107574706,LOC107664643,LOC107655791,LOC107664642 coding upstream 141 10659883 ~ 10662426 (-)
arhgap21a arhgap21,LOC107570046,LOC106534829,LOC107755714 coding upstream 203839 10863581 ~ 10865698 (-)
actr3b actr3b,LOC107550018,LOC107664653,LOC106590428 coding upstream 607239 11266981 ~ 11283509 (-)
galnt11 galnt11,LOC107664652,LOC107655804,LOC107742260 coding upstream 740247 11399989 ~ 11415573 (-)
atp6v0a1b atp6v0a1b,LOC107742255,LOC107550020,LOC107664669,LOC107755711,LOC107557242,LOC107655803,LOC108426558 coding upstream 759277 11419019 ~ 11436687 (-)
G162081 NA non-coding downstream 95720 10553498 ~ 10554047 (-)
G162020 NA non-coding downstream 203340 10446039 ~ 10446427 (-)
LOC122329558 NA non-coding downstream 308404 10328669 ~ 10341363 (-)
G161985 NA non-coding downstream 355609 10290175 ~ 10294158 (-)
G161981 trpc1,LOC107687523,LOC107588031,LOC107739119,LOC107675135,LOC107758253 non-coding downstream 435671 10211151 ~ 10214096 (-)
G162102 NA non-coding upstream 459964 11119706 ~ 11149416 (-)
G162193 NA non-coding upstream 827188 11486930 ~ 11494948 (-)
G162204 NA non-coding upstream 856096 11515838 ~ 11518808 (-)
G162218 NA non-coding upstream 867040 11526782 ~ 11528934 (-)
LOC122329540 NA non-coding upstream 1286278 11946020 ~ 11970270 (-)
zgc:174877 zgc:174877,LOC107687531,LOC107709772,LOC107588023 other downstream 191291 10451559 ~ 10458476 (-)
myo3a myo3a,LOC107687530,LOC107675224,LOC107739129,LOC107758395,LOC107570047 other downstream 213304 10366173 ~ 10436463 (-)
G161992 NA other downstream 363159 10280797 ~ 10286608 (-)
G161893 LOC107563058 other downstream 716965 9931295 ~ 9932802 (-)
LOC122330139 lyrm4,LOC107692762,LOC107570464,LOC107653796,LOC107713738 other downstream 2566837 8038747 ~ 8082930 (-)
dpp6a dpp6a,dpp6,LOC107755713,LOC107664663,LOC107655790 other upstream 6769 10666511 ~ 11010248 (-)
G162152 LOC107550009,LOC107709778 other upstream 692319 11352061 ~ 11352859 (-)
txndc5 txndc5,LOC107730007,LOC107678545,LOC107557239 other upstream 922390 11582132 ~ 11619080 (-)
mppe1 mppe1,LOC107726146,LOC107702491,LOC105030507 other upstream 1597040 12256782 ~ 12304689 (-)
LOC122329483 jph1a,jph1,LOC107596049,LOC107758817,LOC107740042,LOC107589924,LOC107657819,LOC107693808 other upstream 2175036 12834778 ~ 12888181 (-)

Expression


Co-expression Network