LOC122330139 (lyrm4,LOC107692762,LOC107570464,LOC107653796,LOC107713738)


Basic Information

Item Value
gene id LOC122330139
gene name lyrm4,LOC107692762,LOC107570464,LOC107653796,LOC107713738
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 8038747 ~ 8082930 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU239311
GCGGCGTCCAGCAGAGAGCATGTACTGTCACTCTACAGACTGCTTCTGAAGGAGAGCAAGAAATTCCCCTCTTACAATTATAGGACCTACGCTCTACGGCCGGTACGAGACGCCTTCAGGGAGAACCGGACCGCTGAAGATCCGGAGGTTGTAGAGGAGCTGCTGAACAGGGCCCGGGACAGTTTGGCCCTCATCCAGAGACAGGTGTGCATAGGGAAGATGTTTGAGATCCAGAAGACGGTCGTGGAACAGGAGGACAATAAGAGCGACTGATGTGGCGTAGCAGCGACGGCCGGGTGTTTATTTCCTGTGTCTTCTCGGGGGTTGAGGGTCTTCTGTCTATCTTCGAGTCTCGTCTTCAAACATCTGCATCAGGCCGGTCTTGATGGCTTTACGATTCTGCGTGCCACGAAATGAGATATAATTGTACATAATGTAgtatttttcatgcttttgcGGTCAAcgttacaataaataaatgt
>XM_043226987.1
GGCGCGCCTCTCATGACTGTTCTTGGGTCCTTGCGTGTAACTGACAGCTCTGTTTCCATCATGGCGGCGTCCAGCAGAGAGCATGTACTGTCACTCTACAGACTGCTTCTGAAGGAGAGCAAGAAATTCCCCTCTTACAATTATAGGACCTACGCTCTACGGCCGGTACGAGACGCCTTCAGGGAGAACCGGACCGCTGAAGATCCGGAGGTTGTAGAGGAGCTGCTGAACAGGGCCCGGGACAGTTTGGCCCTCATCCAGAGACAGGTGTGCATAGGGAAGATGTTTGAGATCCAGAAGACGGTCGTGGAACAGGAGGACAATAAGAGCGACTGATGTGGCGTAGCAGCGACGGCCGGGTGTTTATTTCCTGTGTCTTCTCGGGGGTTGAGGGTCTTCTGTCTATCTTCGAGTCTCGTCTTCAAACATCTGCATCAGGCCGGTCTTGATGGCTTTACGATTCTGCGTGCCACGAAATGAGATATAATTGTACATAATGTAgtatttttcatgcttttgcGGTCAAcgttacaataaataaatgtcagttACATTTTG

Function

symbol description
lyrm4 Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 19. Orthologous to human LYRM4 (LYR motif containing 4).

NR:

description
PREDICTED: LYR motif-containing protein 4B-like

GO: NA

KEGG:

id description
K22069 LYRM4; LYR motif-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU239311 False 482 lncRNA 0.50 3 8038760 8082867
XM_043226987.1 True 558 mRNA 0.50 3 8038747 8082930

Neighbor

gene id symbol gene type direction distance location
LOC122330133 LOC107729929,LOC107692759,LOC107570461,LOC107713955 coding downstream 9923 7980823 ~ 8028824 (-)
ly86 LOC107593115,LOC107653794 coding downstream 117756 7919552 ~ 7920991 (-)
rreb1a LOC107713689,LOC107692757,LOC107653799,LOC107552789,LOC107593105 coding downstream 123769 7868824 ~ 7914978 (-)
cul2 cul2 coding downstream 183013 7839930 ~ 7855734 (-)
nrp1a nrp1a,nrp1,LOC107565689 coding downstream 806486 7171518 ~ 7232261 (-)
nrn1a nrn1a,nrn1,LOC107734388,LOC107713755,LOC105890828,LOC106590090 coding upstream 124605 8207535 ~ 8213385 (-)
LOC122329481 LOC107593121,LOC107713971 coding upstream 133536 8216466 ~ 8226923 (-)
sugct sugct,LOC107687505,LOC107713787,LOC106590081 coding upstream 228294 8311224 ~ 8400415 (-)
nck1b nck1b,nck1,LOC107683484,LOC107600141,LOC107713805,LOC107588047,LOC107734380 coding upstream 340962 8423892 ~ 8455125 (-)
slc35g2b slc35g2b,slc35g2,LOC107588046,LOC107687509,LOC107714021,LOC107683493,LOC103026733 coding upstream 375705 8458635 ~ 8463500 (-)
G161558 NA non-coding downstream 5066 8033451 ~ 8033681 (-)
G161538 NA non-coding downstream 70704 7965924 ~ 7968043 (-)
G161546 NA non-coding downstream 82110 7956401 ~ 7956637 (-)
G161491 NA non-coding downstream 179442 7858335 ~ 7859305 (-)
G161487 NA non-coding downstream 201635 7836489 ~ 7837112 (-)
G161603 NA non-coding upstream 121015 8203945 ~ 8206668 (-)
G161661 NA non-coding upstream 280580 8363510 ~ 8363991 (-)
G161668 NA non-coding upstream 391560 8474490 ~ 8474707 (-)
G161670 NA non-coding upstream 393243 8476173 ~ 8476475 (-)
G161671 NA non-coding upstream 393789 8476719 ~ 8477053 (-)
pard3aa pard3,LOC107713921,LOC107734328,LOC108431315,LOC107692754 other downstream 200226 7390095 ~ 7838521 (-)
ralaa ralaa,rala,LOC107565693,LOC103042957,LOC108268083,LOC101477841,LOC107655676 other downstream 941908 7090514 ~ 7096839 (-)
G161327 LOC107713878 other downstream 1033339 6945186 ~ 7005408 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other downstream 1568646 6396171 ~ 6470101 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other downstream 1917830 6100744 ~ 6120917 (-)
G161893 LOC107563058 other upstream 1848365 9931295 ~ 9932802 (-)
G161992 NA other upstream 2197867 10280797 ~ 10286608 (-)
myo3a myo3a,LOC107687530,LOC107675224,LOC107739129,LOC107758395,LOC107570047 other upstream 2283243 10366173 ~ 10436463 (-)
zgc:174877 zgc:174877,LOC107687531,LOC107709772,LOC107588023 other upstream 2368629 10451559 ~ 10458476 (-)
dpp6a dpp6a,dpp6,LOC107755713,LOC107664663,LOC107655790 other upstream 2583581 10666511 ~ 11010248 (-)

Expression


Co-expression Network