ly86 (LOC107593115,LOC107653794)


Basic Information

Item Value
gene id ly86
gene name LOC107593115,LOC107653794
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 7919552 ~ 7920991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226789.1
CCTAAATGAGAAGTTAAGTTAAGTCTCGTTCCTCCACGTCTTTCACCTCTGAAGCGGGTCTATGATGACACGACTGCGTGGCAGTGTGATGATGGTCCTGATTCTGGTTCAGATGAATGGGGTTCGCTCTCAGGACCCTCGGGACCCTCGGTGGCCGCTTCACACGATCTGCGACTCCGGAAAAATCACGGTGACCTACACGAGCTGCGATCCTTTGCAGGATGTAGGTTTCACTTTCCTGCCTTGCCCTGAGAGATTGACCGACCTCATAAAGATCAGACTGGCCTTGTTTCTGAGGCAGCCCGTCGACGAGCTCTATTCATCATACGAGCTGTGGCTAAATGGTCACGCAATCTTGAAACGGGACGAGCCCCTTTGTCTTCCTCATTTCCCGCGTTTCAAGTTTTGTGGAAGCAGGAGAGGAGAAATCATCACCATCGATTCATCATTTAAGTCAAAAATAGATCTCTCTCTAAAGGCTAACTTTGATCTCAAACTTCGTGCAGTAAATCAAGATGGCTTCCTGATCGCCTGCGTGAATGCAACCCTCAGCTTTCATTGACGCCCGTTAAACTGAGGGGTTGTTGTTATAttgctgcatttttaaagaGATCAGTTGGTGTTTGTACAGTagtctttcattttattgttttgccaTGGTTCCCGAtctttgctattttaaaatccattaaaaactgaatac

Function

NR:

description
lymphocyte antigen 86

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226789.1 True 703 mRNA 0.46 5 7919552 7920991

Neighbor

gene id symbol gene type direction distance location
rreb1a LOC107713689,LOC107692757,LOC107653799,LOC107552789,LOC107593105 coding downstream 4574 7868824 ~ 7914978 (-)
cul2 cul2 coding downstream 63818 7839930 ~ 7855734 (-)
nrp1a nrp1a,nrp1,LOC107565689 coding downstream 687291 7171518 ~ 7232261 (-)
itgb1a itgb1a,LOC107565694,LOC107566918,LOC107653806,LOC107734314 coding downstream 751361 7141975 ~ 7168191 (-)
cdk13 LOC107653808,LOC107713640,LOC107655698,LOC107734321 coding downstream 831352 7072452 ~ 7088200 (-)
LOC122330133 LOC107729929,LOC107692759,LOC107570461,LOC107713955 coding upstream 59832 7980823 ~ 8028824 (-)
nrn1a nrn1a,nrn1,LOC107734388,LOC107713755,LOC105890828,LOC106590090 coding upstream 286544 8207535 ~ 8213385 (-)
LOC122329481 LOC107593121,LOC107713971 coding upstream 295475 8216466 ~ 8226923 (-)
sugct sugct,LOC107687505,LOC107713787,LOC106590081 coding upstream 390233 8311224 ~ 8400415 (-)
nck1b nck1b,nck1,LOC107683484,LOC107600141,LOC107713805,LOC107588047,LOC107734380 coding upstream 502901 8423892 ~ 8455125 (-)
G161491 NA non-coding downstream 60247 7858335 ~ 7859305 (-)
G161487 NA non-coding downstream 82440 7836489 ~ 7837112 (-)
G161481 NA non-coding downstream 365950 7553095 ~ 7553602 (-)
G161358 NA non-coding downstream 815506 7103152 ~ 7104046 (-)
G161356 NA non-coding downstream 817469 7101252 ~ 7102083 (-)
G161546 NA non-coding upstream 35410 7956401 ~ 7956637 (-)
G161538 NA non-coding upstream 44933 7965924 ~ 7968043 (-)
G161558 NA non-coding upstream 112460 8033451 ~ 8033681 (-)
G161591 NA non-coding upstream 143740 8064731 ~ 8066583 (-)
G161603 NA non-coding upstream 282954 8203945 ~ 8206668 (-)
pard3aa pard3,LOC107713921,LOC107734328,LOC108431315,LOC107692754 other downstream 81031 7390095 ~ 7838521 (-)
ralaa ralaa,rala,LOC107565693,LOC103042957,LOC108268083,LOC101477841,LOC107655676 other downstream 822713 7090514 ~ 7096839 (-)
G161327 LOC107713878 other downstream 914144 6945186 ~ 7005408 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other downstream 1449451 6396171 ~ 6470101 (-)
LOC122330195 pard3,LOC107713921,LOC107734328,LOC107692754,LOC108431315 other downstream 1798635 6100744 ~ 6120917 (-)
LOC122330139 lyrm4,LOC107692762,LOC107570464,LOC107653796,LOC107713738 other upstream 117756 8038747 ~ 8082930 (-)
G161893 LOC107563058 other upstream 2010304 9931295 ~ 9932802 (-)
G161992 NA other upstream 2359806 10280797 ~ 10286608 (-)
myo3a myo3a,LOC107687530,LOC107675224,LOC107739129,LOC107758395,LOC107570047 other upstream 2445182 10366173 ~ 10436463 (-)
zgc:174877 zgc:174877,LOC107687531,LOC107709772,LOC107588023 other upstream 2530568 10451559 ~ 10458476 (-)

Expression


Co-expression Network