CI01000003_02385930_02406911 (USP33)


Basic Information

Item Value
gene id CI01000003_02385930_02406911
gene name USP33
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 2385767 ~ 2406911 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_02385930_02406911.mRNA
GAGACGCGGCACAACCTGACAGTGAATCTGACCACTTTAAGAGTGTGGTGTTATGCCTGCACCAAGGAGGTTTTCCTGGAAAGAAAACTGGGTCCACACACACACTTGCCCAGCGCTGCCAAACCCATCTCTCCAGTACAGACCCCCAGTCAGGATCCAAAAGCTCCCGGGAGCCCCACCTCCCTGAGAATTCCTCCAACGGGAACCTGTGATGACCTGGACATGGAAACTGAGGAGGAGGATGAACTGAGGACCAGAGGTCTGACTGGACTGAAGAACATTGGCAATACCTGCTACATGAACGCAGCGCTCCAGGCACTCTCTAACTGTCCTCCACTGACTCAGTTTTTCCTGGACTGTGGTGGTCTGGTGAAGACAGACAAGAAGCCAGCACTATGCAAGAGCTATCAGAAACTCATCACAGACCTGTGGCACAAAAACAGGAACTCCTATGTTGTTCCCACAAATCTATTCCAGGGCATTAAGGCTGTAAACCCAATGTTTCGTGGTTATTCCCAACAGGACTCTCAGGAGTTCCTGCGTTGTCTGATGGACCAACTCCACGAGGAGCTCAAGGAGCCCATTCCTGAACCCGAGGACCCAAATCAGGCTGTGGCCATGGACGACAGTCCCGACGAGGAGAACCACAGCCAATCAGACGACTTCCAGTCCTGCGAGTCGTGCGGCAGCAGCGATCGTGCTGAAAGCGAAGGCCCCAGAGTCCCAGAAGACATCAACGAAGCTGAGATGTTGATGCCAGAGCACAACCAAAACAACCGGGATTGGCAGAAAGAGAAAAATCTCATCAACAACCTGTACCGTGCCGGTTCCCATTGCGACCTGGACAAAGATGTGGACACGACCACCGAGTCGAGGCCAATTATCAGCAGCCAAGGAGCCATTAAAGCTCAGGGCCGAACTTCAGATTCAAACCCTGAAATCCATGTCAGCAGTAGCGTCAGACCACAGAGTCCTAATGGAAATGAGGGAATCACATCTAGACTGTCCAGCAGTCCCCCCAAATCTTCAATGTGGCCAAACCTGAGCTCTACTCACAAGAAAGTACCCTCGTTCACCCCACCTAAGAGCAAGCGGCAGAGGAAATATCGCAGCATCATCTCTGAAGTTTTCGACGGCACCATTGTCAGCTCAGTTCAGTGTCTGACCTGTGACCGGGTTTCGGTGACTTTGGAGAACTTCCAGGACATCTCTTTGCCCATCCCAGGGAAAGAGGACCTTGCCAAGCTGCACTCTTCCTCCCACCAGACGGCTCTTGTCAAGGCTGGTTCCTGTGGAGAAGCCTATGCCCCTCAAGGCTGGATTGCTTTCGTCATGGAATATATCAAGAGGTTACGGAATGGGGTCAAATTCTGCAAAGTTCAGAGTTTGCCAGAGATTTTGTGCATTCACCTCAAGCGCTTCAGACATGAACTTATGTTCTCCACCAAAATCGGCACTCATGTGTCCTTCCCTTTGGAAGGCCTCGAAATGCAGCCCTTCCTGGCCAAGGACAGCTCCGCCCAGACCACCACCTACGACCTGCTGTCAGTCATCTGTCACCACGGCACTGCCAGCAGTGGTCACTATATTGCCTATTGTCGGAATGAACTGAACCAGCAGTGGTACGAGTTCGATGACCAGAGCGTTACTGAGGTGTCTGAGTCCTGTGTTCAAAATGCGGAGGCATATGTGCTCTTTTACAAGAAGAGTAACGACGAGTCTCAGAAGGAGAGGCGGAAGGTGACCAGTCTGCTCAACATGATGGAGCCAAGCCTCCTGCAGTTCTACATCTCCCGCCAGTGGCTGAACAAGTTCAAAACCTTCGCTGAGCCAGGACCCATCTCAAACCATGACTTCCTGTGTGCCCATGGAGGTATTCCTCCAAATAAAGCCACGTCCATTGATGATCTTGTTATGATGCTTCCTCAAAGTGTATGGGATCATCTGTATAGCAGGTACGGAGGCGGCCCCGCTGTCAATCACTTGTATGTCTGCCACACCTGCCAGACTGAGATCGAGAAGCTGGAGAAACGCCGCAAGAATGAGCTGGACATGTTTGTTCGGCTCAATAAGGCATTTCAGGAGGAGGAGTCTCCTGTGGTGATATACTGTATCAGCATGCAGTGGTTCCGGGAATGGGAAGGTTTTGTCAAAGGCAAGGACATTGATCCACCAGGGCCAATTGATAACTCCAAGATTGCTGTAAATAAAAATGGACACATCACATTAAAGCCAGGTGCCGATTCAGGTCAGATATCAGAAGAGACCTGGAACTTCCTCCATTCCATCCACGGAGGAGGGCCGGTGGTGACCGTGCGGCCCAGCGTCAACCATCAGGAGTCAGAGAGTTCTCAAGCAGAGGAAAAGATCGAAGTGGAGACGCGCTCTGTGTAGTTGTGCTGAGATGCTGCTGGGCCGCAAGGGGACCGACAAACACTTATTTTGCACTTCACTTTTGTTTTCAAGGATTCTAGCAAAGGACCTTACAGCTTCACCTCATCATACACACTCTCTATACCCTTTATGACTGTTCTTTATAGCAGACGGATGGATTAAA

Function

symbol description
usp33 Predicted to enable cysteine-type endopeptidase activity; thiol-dependent deubiquitinase; and zinc ion binding activity. Predicted to be involved in several processes, including axon guidance; centrosome duplication; and protein deubiquitination. Predicted to act upstream of or within endocytosis and ubiquitin-dependent protein catabolic process. Predicted to be located in centrosome. Predicted to be active in cytoplasm. Orthologous to human USP33 (ubiquitin specific peptidase 33).

GO:

id name namespace
GO:0071108 protein K48-linked deubiquitination biological_process

KEGG:

id description
K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_02385930_02406911.mRNA True 2557 mRNA 0.51 18 2385767 2406911

Neighbor

gene id symbol gene type direction distance location
CI01000003_02353398_02370544 ZZZ3 coding downstream 15223 2353398 ~ 2370544 (-)
CI01000003_02221239_02254635 PIGK, PIGK.S coding downstream 131132 2221198 ~ 2254635 (-)
CI01000003_02091233_02092464 NA coding downstream 293082 2091084 ~ 2092685 (-)
CI01000003_01931888_01950409 DNAJB4 coding downstream 435271 1931020 ~ 1950496 (-)
CI01000003_01870680_01887249 NA coding downstream 498512 1870345 ~ 1887255 (-)
CI01000003_02449147_02456088 FUBP1 coding upstream 41724 2448635 ~ 2456088 (-)
G23849 NA non-coding downstream 184820 2200630 ~ 2200947 (-)
G23847 NA non-coding downstream 191799 2193581 ~ 2193968 (-)
G23844 NA non-coding downstream 192345 2190697 ~ 2193422 (-)
G23824 NA non-coding downstream 243117 2142391 ~ 2142650 (-)
G23760 NA non-coding downstream 258600 2126966 ~ 2127167 (-)
G23983 NA non-coding upstream 53898 2460809 ~ 2461039 (-)
G23985 NA non-coding upstream 60031 2466942 ~ 2467153 (-)
G23988 NA non-coding upstream 67353 2474264 ~ 2474516 (-)
G23990 NA non-coding upstream 69665 2476576 ~ 2477067 (-)
G23997 NA non-coding upstream 83144 2490055 ~ 2490290 (-)
G22716 NA other downstream 2316023 50512 ~ 69744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location