CI01000003_02449147_02456088 (FUBP1)


Basic Information

Item Value
gene id CI01000003_02449147_02456088
gene name FUBP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 2448635 ~ 2456088 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_02449147_02456088.mRNA
ATCAACCAGAAACCAAGAAGGTTCCACCAAGCGATCCTTTTTCATCCATGGGAGGCATGGGTGGCCCACCAAGGTCTATATCAGAAGAGTATAAGGTTCCAGATGGCATGGTTGGCTTCATTATTGGAAGAGGAGGAGAACAGATATCAAGAATCCAGCAGGACTCAGGCTGCAAAATACAGATTGCTCCTGACAGTGGTGGCATGCCTGAGAGGACTGCAAAGAGGTTGCTCTCAGAGATCGTAGAGAAAGGCAGACCGTCTCCAGCATTCCACCACAATGAAGGACCAGGGATGTCTGTTCAGGAGATCATGATCCCAGCCTCTAAAGCGGGTCTGGTCATTGGAAAGGGTGGAGAAACAATTAAACAGTTACAGGAACGTGCTGGAGTCAAAATGGTCATGATTCAAGATGGACCCCAAAACACAGGTGCTGATAAACCACTCAGGATCTCTGGCGATCCTTTTAAAGTTCAGCAAGCAAAAGACATGGTGATGGATCTGATCAGAGATCAGGGTTTCCGGGAACAGAGAGGAGAATATGGTTCTAGAGTTAGCGGTGGAGAAGGTGGTCTGGATGTCCCTGTGCCAAGGTTTGCAGTGGGAATTGTGATTGGCAGGAATGGTGAAATGATCAAGAAGATTCAGAATGATACTGGTGTGAGGATTCAGTTCAAACCAGATGATGGTACCACACCAGAGAGGATAGCTCAGATCATGGGGCCTCCAGACCGGGCACAGCATGCAGCAGATATCATAACTGACCTACTGAGAAGTGTGCAGGCAGGAGGCCCCCCTGGTCACGGTGGGGGCAGAGGGAGAGGCCGTGGGCAGGGAAACTGGAACATGGGCCCTCCTGGAGGCCTGCAAGAATTCACTTTCACTGTGCCTTCCATGAAGACCGGCCTCATTATTGGCAAAGTTAGCCCTATGGGTGGCCCTCATGGTGGTCCTGGGCCCCACGGTGGTCCTTCTCATGGCCCCCCTGGTCCACCAGGACCTCCTGCTCCCATGGGCCCATACAACCCTGGGCCCTATGGCCAGGGCCCTCCTGGACCACATGGTCCTCCAGCACCATACCAGCCTCAAGGCTGGGGCAACGGATACCCCCACTGGCAGCAAGGGCAGCCAGATCCCAATAAAGCAGCAGCTGATGCTAATGCTGCCGCATGGGCAGCCTATTATTCTCAGTACCAGCAGCAGCCCCAGGGCCCCATGACACCCACTTCAGCAGCCCCAGGCACAACCCAGTCCAATGGACAAGGTGACCCGCAAGCTCCAGGTCAAAGTGGACAGGCAGATTACACCAAGGCCTGGGAGGAATATTACAAGAAATTGGGTATAAATATTTTGCCAAATGTAGCTTCAGGTCAAGGACAGCCTCAGCAGGACTACACGAAGGCATGGGAAGAGTACTATAAGAAGCAAGGTCAAGCTGCTCCTCAGGCGGCTGCAGCAGCAGCGACAACTCAGCCAGGAGGTCAGCCAGATTACAGTGCAGCGTGGGCAGAGTACTACCGCCAACAGGCAGCGTACTACGGCCAAGGCGCCCCTCAGGCGATGGGAGCTGCACCCCAGGCTCAGCAGGTTCAGCAGGTTTCCAGATGAGTCATCGATACAACACTTAACCAAACACTTTCCTCCTCAAACAGGCTTCTTTTATATCTTTTCTTTTCTTTTTATTTATTTTTTTTTATTTTGGGAGGGTGTTGCATAAATGTTTCTGCTCTTAACATGTTGTGTATTTCTTATGTATTTCTTCTGCACAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCAGAAAAAAACCTTTGTTAAATGTTTGGATGCAGACGCCATGATGAAGATCTTAATTTCATTGGTTTGAGTGTTTAAGCTAGATCGCAGACCGGCTCCAAAGTCAAGATATATATATATATATATATTTTTTTTTTCCTTTTTGTTTTGCCACTCTTGTAAATGAACGGTTTGTTTTTAGTCGGGTAATATTGGTCATTCCAGCTCCTGTATCTCCTGTATCTCATGTAGTTCTGAGACTAAACTTTAGTCATTTCCATGTAAATCATCTCAGTTTTAATATGATATGCCTGTTGTGTTTTGCAATAAA

Function

symbol description
fubp1 Enables mRNA 3'-UTR binding activity. Acts upstream of or within regulation of gene expression. Predicted to be active in cytoplasm and nucleus. Orthologous to human FUBP1 (far upstream element binding protein 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_02449147_02456088.mRNA True 2119 mRNA 0.49 17 2448635 2456088

Neighbor

gene id symbol gene type direction distance location
CI01000003_02385930_02406911 USP33 coding downstream 41724 2385767 ~ 2406911 (-)
CI01000003_02353398_02370544 ZZZ3 coding downstream 78091 2353398 ~ 2370544 (-)
CI01000003_02221239_02254635 PIGK, PIGK.S coding downstream 194000 2221198 ~ 2254635 (-)
CI01000003_02091233_02092464 NA coding downstream 355950 2091084 ~ 2092685 (-)
CI01000003_01931888_01950409 DNAJB4 coding downstream 498139 1931020 ~ 1950496 (-)
G23849 NA non-coding downstream 247688 2200630 ~ 2200947 (-)
G23847 NA non-coding downstream 254667 2193581 ~ 2193968 (-)
G23844 NA non-coding downstream 255213 2190697 ~ 2193422 (-)
G23824 NA non-coding downstream 305985 2142391 ~ 2142650 (-)
G23760 NA non-coding downstream 321468 2126966 ~ 2127167 (-)
G23983 NA non-coding upstream 4721 2460809 ~ 2461039 (-)
G23985 NA non-coding upstream 10854 2466942 ~ 2467153 (-)
G23988 NA non-coding upstream 18176 2474264 ~ 2474516 (-)
G23990 NA non-coding upstream 20488 2476576 ~ 2477067 (-)
G23997 NA non-coding upstream 33967 2490055 ~ 2490290 (-)
G22716 NA other downstream 2378891 50512 ~ 69744 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015226 fubp1 coding NC_007113.7 CM002886.2 8649293 ~ 8663104 (+)
eurasian perch (Perca fluviatilis) G115095 NA non-coding NC_053122.1 CM020919.1 16094010 ~ 16097398 (+)
striped catfish (Pangasianodon hypophthalmus) G73249 fubp1 non-coding NC_047598.1 CM018544.1 29188158 ~ 29189340 (-)
bowfin (Amia calva) AMCG00004968 fubp1 coding CM030140.1 CM030140.1 11316701 ~ 11325663 (+)
tiger barb (Puntius tetrazona) G58734 NA non-coding NC_056705.1 CM032074.1 38358138 ~ 38358661 (-)