tuba7l (tuba7l,LOC107658546,LOC105015227,LOC100136736,LOC108255233,LOC107706804,LOC105889199)


Basic Information

Item Value
gene id tuba7l
gene name tuba7l,LOC107658546,LOC105015227,LOC100136736,LOC108255233,LOC107706804,LOC105889199
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048028.1
NCBI id JAEQBD010000373.1
chromosome length 1110666
location 723154 ~ 726562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU269283
GATCAGTCCTTCAACACCTTCTTCAGCGAGACCGGCGCCGGGAAACACGTACCCAGAGCGGTGTTCGTGGACCTCGAACCCACCGTCGTTGATGAGGTTCGAATTGGAACATACAGGCAGCTGTTTCACCCAGAGCAGCTGATAACTGGGAAGGAGGATGCTGCCAACAATTACGCCAGAGGCCATTACACCATTGGCAAGGAAATAGTAGATGTGGTAATTGATCGCGTTCGCAAACTGtgcgaCCAGTGCACTGGACTCCAAGGATTCCTCATCTTCCACAGCTTTGGCGGTGGAACTGGTTCAGGCTTTGCTTCACTGTTGATGGAAAGGTTGTCCGTTGACCACGGCAAGAAAGCCAAGCTTGAG
>XM_043231529.1
GTGCAGCGCGAGTGTATCTCCATTCACGTGGGTCAGGCTGGGGTGCAGATCGGTAACGCGTGCTGGGAGCTGTACTGTCTCGAGCACGGCATACAACCGGATGGGCACATGCCCACCGACCAGACCACCTCCGGCGGAGATCAGTCCTTCAACACCTTCTTCAGCGAGACCGGCGCCGGGAAACACGTACCCAGAGCGGTGTTCGTGGACCTCGAACCCACCGTCGTTGATGAGGTTCGAATTGGAACATACAGGCAGCTGTTTCACCCAGAGCAGCTGATAACTGGGAAGGAGGATGCTGCCAACAATTACGCCAGAGGCCATTACACCATTGGCAAGGAAATAGTAGATGTGGTAATTGATCGCGTTCGCAAACTGtgcgaCCAGTGCACTGGACTCCAAGGATTCCTCATCTTCCACAGCTTTGGCGGTGGAACTGGTTCAGGCTTTGCTTCACTGTTGATGGAAAGGTTGTCCGTTGACCACGGCAAGAAAGCCAAGCTTGAGTTTGCGGTTTACCCTGCACCTCAGGTTTCTACCGCAGTGGTAGAGCCCTACAATTCTATTCTGACCACACACACCACCCTCGAGCACTCCGACTGCGCCTTCATGGTGGACAACGAGGCCATCTACGACATCTGCCGAAACAACCTGGACATAGAGCGGCCCACGTACACCAACCTCAACCGCCTCATTGGCCAGATCGTGTCATCGATCACCGCCTCCCTGCGCTTCGACGGAGCTCTCAACGTCGATCTGACAGAGTTCCAAACCAACCTGGTGCCGTACCCCCGCATCCACTTCCCCCTGGTCACGTACGCCCCGGTGATCTCCGCCGAGAAGGCGTACCACGAGCAGCTGTCCGTCATGGAAATCACCAACTCCTGCTTTCAGCCATCCAATCAGATGGTGAAGTGCGACCCTCGGCACGGGAAGTACATGGCTTGCTGTATGCTTTACCGTGGAGACGTGGTTCCAAAGGACGTCAACGCCGCCATTGGAAGCATAAAGACCAAGAGAACCATTCAGTTTGTTGACTGGTGTCCCACAGGGTTCAAGGTCGGTATCAACTACCAGCCACCAACTGTGGTTCCAGGAGGAGATCTGGCCAAAGTTCAAAGGGCAGTCTGCATGTTGAGCAACACCACAGCCATCGCCGAGGCCTGGGCTCGCCTGGATCACAAGTTCGATCTGATGTACGCAAAGAGAGCCTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAGGGCGAGTTCACGGAGGCCCGTGAAGATTTAGCCGCTCTCGAGAAAGATTACGACGAGGTGGGAGTCGACACTCCCGAAGGAGAAGGTGAAGAGGGAGAAGAAGAAATGTGATATCACTGCAATAAATATTGACATTTCAC

Function

symbol description
tuba7l Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in ovary and testis.

NR:

description
PREDICTED: tubulin alpha chain, testis-specific-like, partial

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU269283 False 369 lncRNA 0.53 3 725234 726424
XM_043231529.1 True 1388 mRNA 0.55 5 723154 726562

Neighbor

gene id symbol gene type direction distance location
npm2b npm2b,LOC107689977,LOC107567750,LOC107758627,LOC107588962,LOC107658627 coding downstream 121557 599313 ~ 601597 (-)
crybb1 crybb1,LOC107588965,LOC107741660,LOC107567753,LOC107758629 coding downstream 216106 502578 ~ 507048 (-)
acads acads,LOC107567748,LOC107689539,LOC107589029,LOC107741687 coding downstream 221428 496051 ~ 501726 (-)
sept5b sept5b,LOC107658623,LOC107741689,LOC107567765,LOC107758631 coding downstream 240275 475111 ~ 482879 (-)
mctp1b mctp1b,LOC107741661,LOC107689511,LOC107758594,LOC107658566,LOC107588966,LOC107567740 coding downstream 248840 447201 ~ 474314 (-)
polm LOC107708201,LOC107658777,LOC107554523 coding upstream 72878 799440 ~ 806277 (-)
mrps24 mrps24,LOC107579488,LOC107658641,LOC107706797,LOC107708198,LOC107657830,LOC107554515 coding upstream 90442 817004 ~ 818998 (-)
pargl LOC107706751 coding upstream 174726 901288 ~ 908979 (-)
LOC122333746 dusp26,LOC107720817,LOC107656427,LOC107704179,LOC107706788 coding upstream 241465 968027 ~ 981324 (-)
LOC122333711 LOC107722340,LOC107704131,LOC107656091,LOC107554537,LOC107706784 coding upstream 277454 1004016 ~ 1007816 (-)
G181461 NA non-coding downstream 2830 719457 ~ 720324 (-)
LOC122333763 NA non-coding downstream 5781 712567 ~ 717373 (-)
G181397 NA non-coding downstream 54888 667765 ~ 668266 (-)
G181371 NA non-coding downstream 135350 587406 ~ 587804 (-)
G181369 NA non-coding downstream 143514 578972 ~ 579640 (-)
G181471 NA non-coding upstream 20737 747299 ~ 747762 (-)
G181473 NA non-coding upstream 23161 749723 ~ 750078 (-)
G181500 NA non-coding upstream 96903 823465 ~ 854284 (-)
G181495 NA non-coding upstream 153803 880365 ~ 884144 (-)
G181528 NA non-coding upstream 185896 912458 ~ 912657 (-)
tacr1b tacr1b,LOC107741654,LOC107706809,LOC107658568,LOC108425229,LOC107689601,LOC107577657 other downstream 40256 674135 ~ 682898 (-)
G181349 myo18b,LOC107758573,LOC107658543,LOC107589013,LOC107567742 other downstream 124509 596892 ~ 598645 (-)
cetn3 cetn3,LOC107758597,LOC107689496,LOC107658563,LOC107589032,LOC107602084,LOC107741664 other downstream 331219 388944 ~ 391935 (-)
LOC122333698 NA other downstream 396424 257630 ~ 326730 (-)
tmem167a tmem167a,LOC107658615,LOC107588977,LOC103397084 other downstream 541146 133827 ~ 182008 (-)
G181475 LOC107741650,LOC107567757 other upstream 24382 750944 ~ 754507 (-)
purbb purb,LOC107588953,LOC107658638,LOC107706799,LOC107708205,LOC107657907,LOC107554550 other upstream 52665 779227 ~ 783680 (-)
ved LOC107554518,LOC107658339,LOC107708197,LOC107706760,LOC107658570,LOC107588950 other upstream 62681 789243 ~ 792617 (-)
G181544 NA other upstream 223407 949969 ~ 951651 (-)
LOC122333748 LOC107658635,LOC107720819,LOC107554521,LOC107704180,LOC107588943,LOC107706789 other upstream 236147 962709 ~ 966210 (-)

Expression


Co-expression Network