npm2b (npm2b,LOC107689977,LOC107567750,LOC107758627,LOC107588962,LOC107658627)


Basic Information

Item Value
gene id npm2b
gene name npm2b,LOC107689977,LOC107567750,LOC107758627,LOC107588962,LOC107658627
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048028.1
NCBI id JAEQBD010000373.1
chromosome length 1110666
location 599313 ~ 601597 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231508.1
GACTTAATTACTGTCACCTGATGAGCAATTAACTTCCTCTTTAAACGTTCACAGGGCGCAaactcactctttcttttcttttgctgtCCTAAAACGCAGCCCTGAGATTTATTTCTGttttctttttcttttacaatgaGCAAAACCGAGAAACCTTTATCCACTCTTTGGGGTTGTGAGCTCAATGACTCCAATAAAGAAGAGTCCTTCAAGACGGATGATACGAACCATCAACACCAGCTGGCGCTAAGAACGATGTGTCTGGGTCACACCGCCAAAGACGAGTTCAATATCGTCGAGCTGGTAACCGGTGAGGGAAACAACAGCGCGAAAGCGGTTCCCATAGCAACGCTACACGCTAAATCTATGCCTACGGTCAATTTGTCTGGATTGGATCTTCATCCACCCGTGACGTTTCGCCTGAAGCATGGTTCTGGGCCGGTGTATGTCGGAGCGGAACATGTGGCCCTGGAGGAGTACTCTGATGATGAAGAGCTGGATGAAGAGATGGACGAGGAggttgaagaagaagaggaagataTCGAAGAATCACCGGTTAAGAAGGTCACAAAAAATGGTGCTGGCAAAAGAAAGAAGCCAGAAAAGGGAGAGGATGAGGAAGCCTCAGATGGTGAAAATCCACCTAAAAAGGGTAAAGGAAGGGGACGGAAGGCAAAGGTGTGATCAGATGTGGATGGGAAGTAGTGTGTTCCCAGAAGGCCGCTGCTGGACACTTGAGTTGGGAGCTCAAATTTCTCACCATGGTCCTATTGTATTTATGCTTTGTCAATAAAACGGTTGGAGGGGAAA

Function

symbol description
npm2b Predicted to enable RNA binding activity; chromatin binding activity; and histone binding activity. Predicted to be involved in chromatin remodeling and positive regulation of DNA replication. Predicted to be located in nucleus. Predicted to be active in cytoplasm; nucleolus; and nucleoplasm. Is expressed in eye; gill; muscle; ovary; and unfertilized egg. Orthologous to human NPM2 (nucleophosmin/nucleoplasmin 2).

NR:

description
nucleoplasmin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231508.1 True 810 mRNA 0.47 10 599313 601597

Neighbor

gene id symbol gene type direction distance location
crybb1 crybb1,LOC107588965,LOC107741660,LOC107567753,LOC107758629 coding downstream 92265 502578 ~ 507048 (-)
acads acads,LOC107567748,LOC107689539,LOC107589029,LOC107741687 coding downstream 97587 496051 ~ 501726 (-)
sept5b sept5b,LOC107658623,LOC107741689,LOC107567765,LOC107758631 coding downstream 116434 475111 ~ 482879 (-)
mctp1b mctp1b,LOC107741661,LOC107689511,LOC107758594,LOC107658566,LOC107588966,LOC107567740 coding downstream 124999 447201 ~ 474314 (-)
tlr8b LOC107589031,LOC107758595,LOC107658565 coding downstream 155643 439370 ~ 443670 (-)
polm LOC107708201,LOC107658777,LOC107554523 coding upstream 197843 799440 ~ 806277 (-)
mrps24 mrps24,LOC107579488,LOC107658641,LOC107706797,LOC107708198,LOC107657830,LOC107554515 coding upstream 215407 817004 ~ 818998 (-)
pargl LOC107706751 coding upstream 299691 901288 ~ 908979 (-)
LOC122333746 dusp26,LOC107720817,LOC107656427,LOC107704179,LOC107706788 coding upstream 366430 968027 ~ 981324 (-)
LOC122333711 LOC107722340,LOC107704131,LOC107656091,LOC107554537,LOC107706784 coding upstream 402419 1004016 ~ 1007816 (-)
G181371 NA non-coding downstream 11509 587406 ~ 587804 (-)
G181369 NA non-coding downstream 19673 578972 ~ 579640 (-)
G181362 NA non-coding downstream 33438 565368 ~ 565875 (-)
G181359 NA non-coding downstream 43689 554490 ~ 555624 (-)
G181353 NA non-coding downstream 89270 508169 ~ 510043 (-)
G181397 NA non-coding upstream 66168 667765 ~ 668266 (-)
LOC122333763 NA non-coding upstream 110970 712567 ~ 717373 (-)
G181461 NA non-coding upstream 117860 719457 ~ 720324 (-)
G181471 NA non-coding upstream 145702 747299 ~ 747762 (-)
G181473 NA non-coding upstream 148126 749723 ~ 750078 (-)
G181349 myo18b,LOC107758573,LOC107658543,LOC107589013,LOC107567742 other downstream 668 596892 ~ 598645 (-)
cetn3 cetn3,LOC107758597,LOC107689496,LOC107658563,LOC107589032,LOC107602084,LOC107741664 other downstream 207378 388944 ~ 391935 (-)
LOC122333698 NA other downstream 272583 257630 ~ 326730 (-)
tmem167a tmem167a,LOC107658615,LOC107588977,LOC103397084 other downstream 417305 133827 ~ 182008 (-)
tacr1b tacr1b,LOC107741654,LOC107706809,LOC107658568,LOC108425229,LOC107689601,LOC107577657 other upstream 72538 674135 ~ 682898 (-)
tuba7l tuba7l,LOC107658546,LOC105015227,LOC100136736,LOC108255233,LOC107706804,LOC105889199 other upstream 121557 723154 ~ 726562 (-)
G181475 LOC107741650,LOC107567757 other upstream 149347 750944 ~ 754507 (-)
purbb purb,LOC107588953,LOC107658638,LOC107706799,LOC107708205,LOC107657907,LOC107554550 other upstream 177630 779227 ~ 783680 (-)
ved LOC107554518,LOC107658339,LOC107708197,LOC107706760,LOC107658570,LOC107588950 other upstream 187646 789243 ~ 792617 (-)

Expression


Co-expression Network