XLOC_006909 (khdrbs1a)


Basic Information

Item Value
gene id XLOC_006909
gene name khdrbs1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45009957 ~ 45022527 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013254
GGATACGTCACTTCCATCTGCGCCATCAGCCTTTGTTAAGAGGAGCACAAAAGCTTCAGGCACGCATTTCCACCATCGCTCTCCAGCAAAGGCTGCTTGAATTCTCCGCTCAATCTccagtttttaaaataacaccCTTCGACATGGATCCCAACAGCAACAAGAGGAAGAACAACGCCGGGGACGGCAAATATCTGCCGGAGTTATTGGCGGAGAAAGACAGCCTGGACTCTTCATTCACACACGCCATGAAACTCCTATCTGCAGAGATTGAGAGAGTCCAGAAAGGTGAACCCAAGAAAGACTCTGAGCTGTATCTGGATCTGTTCGCCTCCAAGAGTGTGCGTGTAAAGGAGAGAGTGCTCATTCCTGTGAAGCAGTATCCCCGATTCAACTTTGTGGGAAAGATTCTGGGGCCTCAGGGCAGCACCATCAAACGTCTGCAGGAGGACACCGGAGCCAAGATCTCAGTGCTGGGAAAGGGCTCCATGAGGGATAAGAACAAGGAAGAGGAGCTAAGGAAGGGTGGAGATCCAAAGTATGCACACTTGGGGATGGAGCTGCATGTGCATATTGAGGTCTTTGCTCCCATTCCTGACTGTTACCTGCGTATGGCTCATGCCATGGATGAGGTCAAGAAATTCCTGATGCCTGTGGAAGGTATGGATGAGATGCACCCTGATGCTTTCATGGATCCAGGTTTTCTGAACGGCGCTCAGGATATGTCTGGCCATGGCAGAGGCATGCCAGGCAGAGGACGTGGTGGCCCTCCCCCAATGGGTGCTAGGGGTCGTGGTATGCCTCCTCGTGGAGCACCGCGCGGAGGAGCACCAAGGGGAGGTCCTGGCCGTGGAGCTGCAGCACGTGGAGCCCCAGCAGGACGAGGAGGACCTCAGCCCCCCACCCCAACCAGAGGGGGAGCAGCATCCCGCTCAAGGCCACCAACCCAAGCTGCCAGAATGACACCTGCAGCCGGACTCTCCCACCAACAGGCCAAACCTGAAACTTACGGAGAATATGCCTATGAAGAACCATATGCTGAGGCTTCCTATGAAGGATATGAGAGCTACTACAGTCAGCAGCCTGCACAGCCAGATACGGAGTATTATGACTACGGCCACGGAGAGGCACAGGAGAGTTACGAGTCTTACAaAGATGACTGGGAAGGTGGCGCTTGGGGTGGTGCTGGTGGAAAAGCCCCTACAGCTCGCCAAGGAAAATCGTTTCGGGAACACCCTTATGGCCGATACTGAGAGTGCTGTCGGCTCACTGCTGTTGCCTGCGCAGCCTCCTTCCCTCGTAACCTCTTGTTATCATCTAAATGACTGAAGCAGATGGTTCTTTCCAGACTGGTTCACCAGGCAGCTACTACAGGGTTTTTGGTGCTATTTTTGTCCTGAAGAGGAAAATGTCTGAGcctttttatactgttttttttgtGACTGAACAATGTTCAACATTATTTTTTGCCAGTTGTCACTTTTATACTTCtcaattttaaatgatttttatactttttaaataaacttgaattgaagtTT
>TCONS_00013255
GCCTCGCGACGCGCCTAAAGTAATTTCGATTCATTGCGTGACCACGAGGCATGTGTCACTTTTCTCAGCGCTGATCAGTGCAGACCAATCACAGTTTAATGTTGCCCCCTCCCTCCGCCTCATCCAATAATAAAACGCAAGAAGATCTTCCCGGATACGTCACTTCCATCTGCGCCATCAGCCTTTGTTAAGAGGAGCACAAAAGCTTCAGGCACGCATTTCCACCATCGCTCTCCAGCAAAGGCTGCTTGAATTCTCCGCTCAATCTccagtttttaaaataacaccCTTCGACATGGATCCCAACAGCAACAAGAGGAAGAACAACGCCGGGGACGGCAAATATCTGCCGGAGTTATTGGCGGAGAAAGACAGCCTGGACTCTTCATTCACACACGCCATGAAACTCCTATCTGCAGAGATTGAGAGAGTCCAGAAAGGTGAACCCAAGAAAGACTCTGAGCTGTATCTGGATCTGTTCGCCTCCAAGAGTGTGCGTGTAAAGGAGAGAGTGCTCATTCCTGTGAAGCAGTATCCCCGATTCAACTTTGTGGGAAAGATTCTGGGGCCTCAGGGCAGCACCATCAAACGTCTGCAGGAGGACACCGGAGCCAAGATCTCAGTGCTGGGAAAGGGCTCCATGAGGGATAAGAACAAGGAAGAGGAGCTAAGGAAGGGTGGAGATCCAAAGTATGCACACTTGGGGATGGAGCTGCATGTGCATATTGAGGTCTTTGCTCCCATTCCTGACTGTTACCTGCGTATGGCTCATGCCATGGATGAGGTCAAGAAATTCCTGATGCCTGTGGAAGGTATGGATGAGATGCACCCTGATGCTTTCATGGATCCAGGTTTTCTGAACGGCGCTCAGGATATGTCTGGCCATGGCAGAGGCATGCCAGGCAGAGGACGTGGTGGCCCTCCCCCAATGGGTGCTAGGGGTCGTGGTATGCCTCCTCGTGGAGCACCGCGCGGAGGAGCACCAAGGGGAGGTCCTGGCCGTGGAGCTGCAGCACGTGGAGCCCCAGCAGGACGAGGAGGACCTCAGCCCCCCACCCCAACCAGAGGGGGAGCAGCATCCCGCTCAAGGCCACCAACCCAAGCTGCCAGAATGACACCTGCAGCCGGACTCTCCCACCAACAGGCCAAACCTGAAACTTACGGAGAATATGCCTATGAAGAACCATATGCTGAGGCTTCCTATGAAGGATATGAGAGCTACTACAGTCAGCAGCCTGCACAGCCAGATACGGAGTATTATGACTACGGCCACGGAGAGGCACAGGAGAGTTACGAGTCTTACATGACTGAAGCAGATGGTTCTTTCCAGACTGGTTCACCAGGCAGCTACTACAGGGTTTTTGGTGCTATTTTTGTCCTGAAGAGGAAAATGTCTGAGcctttttatactgttttttttgtGACTGAACAATGTTCAACATTATTTTTTGCCAGTTGTCACTTTTATACTTCtcaattttaa
>TCONS_00013256
GGATACGTCACTTCCATCTGCGCCATCAGCCTTTGTTAAGAGGAGCACAAAAGCTTCAGGCACGCATTTCCACCATCGCTCTCCAGCAAAGGCTGCTTGAATTCTCCGCTCAATCTccagtttttaaaataacaccCTTCGACATGGATCCCAACAGCAACAAGAGGAAGAACAACGCCGGGGACGGCAAATATCTGCCGGAGTTATTGGCGGAGAAAGACAGCCTGGACTCTTCATTCACACACGCCATGAAACTCCTATCTGCAGAGATTGAGAGAGTCCAGAAAGGTGAACCCAAGAAAGACTCTGAGCTGTATCTGGATCTGTTCGCCTCCAAGAGTGTGCGTGTAAAGGAGAGAGTGCTCATTCCTGTGAAGCAGTATCCCCGATTCAACTTTGTGGGAAAGATTCTGGGGCCTCAGGGCAGCACCATCAAACGTCTGCAGGAGGACACCGGAGCCAAGATCTCAGTGCTGGGAAAGGGCTCCATGAGGGATAAGAACAAGGAAGAGGAGCTAAGGAAGGGTGGAGATCCAAAGTATGCACACTTGGGGATGGAGCTGCATGTGCATATTGAGGTCTTTGCTCCCATTCCTGACTGTTACCTGCGTATGGCTCATGCCATGGATGAGGTCAAGAAATTCCTGATGCCTGTGGAAGGTATGGATGAGATGCACCCTGATGCTTTCATGGATCCAGGTTTTCTGAACGGCGCTCAGGATATGTCTGGCCATGGCAGAGGCATGCCAGGCAGAGGACGTGGTGGCCCTCCCCCAATGGGTGCTAGGGGTCGTGGTATGCCTCCTCGTGGAGCACCGCGCGGAGGAGCACCAAGGGGAGGTCCTGGCCGTGGAGCTGCAGCACGTGGAGCCCCAGCAGGACGAGGAGGACCTCAGCCCCCCACCCCAACCAGAGGGGGAGCAGCATCCCGCTCAAGGCCACCAACCCAAGCTGCCAGAATGACACCTGCAGCCGGACTCTCCCACCAACAGGCCAAACCTGAAACTTACGGAGAATATGCCTATGAAGAACCATATGCTGAGGCTTCCTATGAAGGATATGAGAGCTACTACAGTCAGCAGCCTGCACAGCCAGATACGGAGTATTATGACTACGGCCACGGAGAGGCACAGGAGAGTTACGAGTCTTACAcagaAGATGACTGGGAAGGTGGCGCTTGGGGTGGTGCTGGTGGAAAAGCCCCTACAGCTCGCCAAGGAAAATCGTTTCGGGAACACCCTTATGGCCGATACTGAGAGTGCTGTCGGCTCACTGCTGTTGCCTGCGCAGCCTCCTTCCCTCGTAACCTCTTGTTATCATCTAAAGTAATTCTAGTTGTTATTTTTGTATGCTGTTTTGGTTAACACACTCCTTTTTAAATATTCTGAATCCCAAGTAGGACGATGACCATTCATAAGTTCAGTACGACACGTTTTAGACTTGCGGTTTATATGATGGATGTGCTTATTCTCTTGGCATTTTGTTTTGcaattttattgttttcttgccggttttgttttttattattattatttttttaatggataaGTGTTTCTTCTTTGGAAAAAAGAAATAAGATACCTGCTAAGACAATTAGCTGATGGCCATATGTAAATGACTtgctaaaaaaaggaaaaaactgcCTGTTAATGTCACTTCTATTCCAAACGCGCTTcaaggcaaaacaaaaaaaaaggaaaaattgaaGGATGCATAAAAATATTAGTTAATTTTCAACCCAACTTGTTTTAAATTTTGATGAGGTAATTTCCTGTTTGATTATAGTCGTAAAATTCAAACTACGCTTCTGCTGATtcgttttgttaaataataaaatgagtaaaacaAATAAGGTTGTAGTTTAGCTTTTACTTCAAGACGAAAAAAATCTTTGTACGTACAACACCCAAATATTCAAAACTTGTACTTTTGGTGTTTTTAATTTTGCAGTTTCCGAAATATTAGCAGACTTTGTGTACATTTTTGCCTAACTAGGGATCTAAATATGTCCAAAATGTGTCCCTACCAGTTTGTCAATAAAGCATAGTTTTTCTTTTACAGCCTTCAAAA
>TCONS_00013257
ATCGCTCTCCAGCAAAGGCTGCTTGAATTCTCCGCTCAATCTccagtttttaaaataacaccCTTCGACATGGATCCCAACAGCAACAAGAGGAAGAACAACGCCGGGGACGGCAAATATCTGCCGGAGTTATTGGCGGAGAAAGACAGCCTGGACTCTTCATTCACACACGCCATGAAACTCCTATCTGCAGAGATTGAGAGAGTCCAGAAAGGTGAACCCAAGAAAGACTCTGAGCTGTATCTGGATCTGTTCGCCTCCAAGAGTGTGCGTGTAAAGGAGAGAGTGCTCATTCCTGTGAAGCAGTATCCCCGATTCAACTTTGTGGGAAAGATTCTGGGGCCTCAGGGCAGCACCATCAAACGTCTGCAGGAGGACACCGGAGCCAAGATCTCAGTGCTGGGAAAGGGCTCCATGAGGGATAAGAACAAGGAAGAGGAGCTAAGGAAGGGTGGAGATCCAAAGTATGCACACTTGGGGATGGAGCTGCATGTGCATATTGAGGTCTTTGCTCCCATTCCTGACTGTTACCTGCGTATGGCTCATGCCATGGATGAGGTCAAGAAATTCCTGATGCCTGTGGAAGGTATGGATGAGATGCACCCTGATGCTTTCATGGATCCAGGTTTTCTGAACGGCGCTCAGGATATGTCTGGCCATGGCAGAGGCATGCCAGGCAGAGGACGTGGTGGCCCTCCCCCAATGGGTGCTAGGGGTCGTGGTATGCCTCCTCGTGGAGCACCGCGCGGAGGAGCACCAAGGGGAGGTCCTGGCCGTGGAGCTGCAGCACGTGGAGCCCCAGCAGGACGAGGAGGACCTCAGCCCCCCACCCCAACCAGAGGGGGAGCAGCATCCCGCTCAAGGCCACCAACCCAAGCTGCCAGAATGACACCTGCAGCCGGACTCTCCCACCAACAGGCCAAACCTGAAACTTACGGAGAATATGCCTATGAAGAACCATATGCTGAGGCTTCCTATGAAGGATATGAGAGCTACTACAGTCAGCAGCCTGCACAGCCAGATACGGAGTATTATGACTACGGCCACGGAGAGGCACAGGAGAGTTACGAGTCTTACAaAGATGACTGGGAAGGTGGCGCTTGGGGTGGTGCTGGTGGAAAAGCCCCTACAGCTCGCCAAGGAAAATCGTTTCGGGAACACCCTTATGGCCGATACTGAGAGTGCTGTCGGCTCACTGCTGTTGCCTGCGCAGCCTCCTTCCCTCGTAACCTCTTGTTATCATCTAAAGTAATTCTAGTTGTTATTTTTGTATGCTGTTTTGGTTAACACACTCCTTTTTAAATATTCTGAATCCCAAGTAGGACGATGACCATTCATAAGTTCAGTACGACACGTTTTAGACTTGCGGTTTATATGATGGATGTGCTTATTCTCTTGGCATTTTGTTTTGcaattttattgttttcttgccggttttgttttttattattattatttttttaatggataaGTGTTTCTTCTTTGGAAAAAAGAAATAAGATACCTGCTAAGACAATTAGCTGATGGCCATATGTAAATGACTtgctaaaaaaaggaaaaaactgcCTGTTAATGTCACTTCTATTCCAAACGCGCTTcaaggc

Function

symbol description
khdrbs1a Enables mRNA 3'-UTR binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; fin; integument; nervous system; and pleuroperitoneal region. Orthologous to human KHDRBS1 (KH RNA binding domain containing, signal transduction associated 1).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0008143 poly(A) binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000210-25 Enables mRNA 3'-UTR binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; fin; integument; nervous system; and pleuroperitoneal region. Orthologous to human KHDRBS1 (KH RNA binding domain containing, signal transduction associated 1).

Ensembl:

ensembl_id ENSDARG00000052856

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013254 False 1541 mRNA 0.51 11 45009957 45022375
TCONS_00013255 False 1483 mRNA 0.51 10 45009997 45022527
TCONS_00013256 False 2070 mRNA 0.46 9 45015315 45022375
TCONS_00013257 True 1604 mRNA 0.49 9 45015704 45022301

Neighbor

gene id symbol gene type direction distance location
XLOC_006908 CR376783.1 coding downstream 11966 44897170 ~ 44997991 (-)
XLOC_006907 CR786566.2 coding downstream 138358 44849564 ~ 44871599 (-)
XLOC_006906 si:dkeyp-2e4.2 coding downstream 157633 44848343 ~ 44852324 (-)
XLOC_006903 si:dkeyp-2e4.6 coding downstream 166138 44827349 ~ 44843819 (-)
XLOC_006910 chp1 coding upstream 13229 45035756 ~ 45063686 (-)
XLOC_006911 NA coding upstream 46747 45069274 ~ 45090329 (-)
XLOC_006912 runx3 coding upstream 70239 45092766 ~ 45225980 (-)
XLOC_006913 BX324224.1 coding upstream 298592 45321119 ~ 45348301 (-)
XLOC_006914 NA coding upstream 445876 45468403 ~ 45475289 (-)
XLOC_006471 BX537274.2 misc downstream 34745052 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 44183732 825904 ~ 826225 (-)
XLOC_006896 CU138544.2 non-coding downstream 921706 44088148 ~ 44088251 (-)
XLOC_006895 NA non-coding downstream 1154170 43854620 ~ 43855787 (-)
XLOC_006892 CT573408.1 non-coding downstream 1609288 43395269 ~ 43400669 (-)
XLOC_006891 NA non-coding downstream 1753687 43252353 ~ 43256270 (-)
XLOC_006887 BX510660.1 non-coding downstream 2099211 42910630 ~ 42910746 (-)
XLOC_006917 NA non-coding upstream 822994 45845521 ~ 45928330 (-)
XLOC_006919 NA non-coding upstream 979867 46002394 ~ 46005252 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_08817640_08823945 KHDRBS1A, KHDRBS1 coding CI01180000 null 8817406 ~ 8824247 (-)