CI01180000_08817640_08823945 (KHDRBS1A, KHDRBS1)


Basic Information

Item Value
gene id CI01180000_08817640_08823945
gene name KHDRBS1A, KHDRBS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8817406 ~ 8824247 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_08817640_08823945.mRNA
ATAAAAGTTTAGGCTTCACGATAGGCCTAAACTAATTTCGACACGTGTCAATCGTTTCTTTTCTCAGCGCTGATGAGGCAGTCCAATCACAGTCGTTTGTTACCAGTGGGTGCCCCTCCCCCCGGCTCATCCAATTCTTAAACGGAAGCCGATTTCGCCCCCTGACGTCACTTCCATCAGCGCCATTAAGCTGCTGTTTCCTTTGTTAAGAGGGGTAGAAAAGCTTCAGCATTAGCACGCGTTTTCACAACAGCACTAATCGCTTAATTTCTCAGCGAAAGTCTCGTAAGCCGTGAGCAAGATGGATGCAAACAACAAGAGGAAGAACAGCACCGGGGACAGTAAATATCTGCCGGAGTTATTGGCGGAAAAAGACAGCCTGGACTCCTCGTTCACGCACGCCATGAAACTCCTAAGCGCAGGGATTGAGAGGGTGCAGAAAGGTGAACCCAAAAAAGAGTCTGAGACATACCTGGATCTGTTCACCGCTAAGAACGTGAGGGTGAAAGAGCGAGTGCTCATTCCAGTGAAACAGTACCCTCGAGTTAATTTCGTGGGCAAGATTCTAGGGCCGCAGGGCAGCACGATCAAACGTTTGCAGGAAGACACTGGAGCGAAAATCTCTGTACTGGGCAAAGGATCCATGAGAGATAAGAACAAGGAAGAGGAGCTGAGGAAGGGTGGAGATCCAAAGTATGCACACTTGGCAATGGAGTTGCATGTCCACATTGAAGTTTTTGCTCCCATTCCAGACTGTTACCTGCGTATGGCACATGCCATGGATGAAGTCAAAAAGTTCCTAATGCCTGTGGATGGTCTTGATGAAATGCATCCCGATGCTTTCATGGATCCAGGGTTTTTGAACGGCTCTCAGGATATGTCTGGCCACGGCAGAGGCCTCGGCCCTCCTGGCAGAGGCCGTGGTGGCCCACCACCCCCTAGGGGTCGCGGTATGCCCCCTCGTGGAGCACCACGTGGAGGAGCTCCAAGAGGAGGTCCAGGACGTGGAGCTGCGGCAAGGGGAGCTCCCGTGGGACGAGGTGGACCTCCACCCTCCACACCAAACAGAGGGGGTGCCGCCTCTCGGTCAAGACCACCAGCCCAGTCTCAGAGGATGACACCAGCATCGGCGCTCTCCCACCAACAGCACTCGGCCAAACCAGAAGCTTACGGTGAATATGCTTATGAAGAACCATATGCAGAGACTTCCTATGAAGGATATGAGAGCTATTACAGTCAACCTGCTCCACAGCCGGACACAGAGTATTATGATTACGGTCACGGAGAGGCACAGGAGACTTACGAATCTTACAGGTCACTAAATCCCTCTGATGTCACAGAGACTCAACATGTTTGTCTTCTATTGAAAAGGATCTTGAGGTCACTCAACACAAAGGCTTTTGTAGCCCAGGGTGAAAGTTTTGACCGTGAAGATGATTCAAATGTTCAGTCTTACCTGATTTTCGCCGGCTTAAACAACAAAATTGGAAAAGATGGCGTAAAGTGTAATGCAAGCTTCAAAAAGGGGCTGATGGCGAGTGGTTCTCTCCAGACTGGCCTTACCAGGCAGCTCTTACAGGTGAAGTGTGTATAAATATTAATGAATTTTCAGCAATCAATGGGTTTTTAAATGTGCAAATACAAGAAATATTCTTTCTAAATTGTGCATGAAGAAAATTATATAAAACAACTTGTTAATCTGGTAGATCCACTTTATATTAGGTCTTTAACTACTATACTGTGTACTATTAATCATTTGATAGTGCACTTATTGTATATATATATATANNNNNNNNNNTATATATATATATATATATATAAAAATAAAA

Function

symbol description
khdrbs1a Enables mRNA 3'-UTR binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; fin; integument; nervous system; and pleuroperitoneal region. Orthologous to human KHDRBS1 (KH RNA binding domain containing, signal transduction associated 1).
khdrbs1 Enables several functions, including protein domain specific binding activity; protein tyrosine kinase binding activity; and single-stranded RNA binding activity. Involved in T cell receptor signaling pathway; positive regulation of RNA export from nucleus; and regulation of gene expression. Located in cytoplasm; membrane; and nucleoplasm. Part of protein-containing complex.

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13198 KHDRBS1; KH domain-containing, RNA-binding, signal transduction-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_08817640_08823945.mRNA True 1829 mRNA 0.47 11 8817406 8824247

Neighbor

gene id symbol gene type direction distance location
CI01180000_08794119_08796998 NA coding downstream 20408 8794119 ~ 8796998 (-)
CI01180000_08754638_08761116 NA coding downstream 56290 8754638 ~ 8761116 (-)
CI01180000_08745988_08748949 GLO1 coding downstream 68030 8745921 ~ 8749376 (-)
CI01180000_08732856_08740755 BTBD9 coding downstream 75961 8732558 ~ 8741445 (-)
CI01180000_08700470_08707817 ZFAND3 coding downstream 109589 8699840 ~ 8707817 (-)
CI01180000_08829933_08835423 CHP1, CHP2 coding upstream 5448 8829695 ~ 8835423 (-)
CI01180000_08863723_08881179 NA coding upstream 39041 8863288 ~ 8882290 (-)
CI01180000_08884283_08892303 NA coding upstream 59599 8883846 ~ 8892677 (-)
CI01180000_08908610_08974338 NA coding upstream 84184 8908431 ~ 8974370 (-)
CI01180000_09031248_09034339 NA coding upstream 206778 9031025 ~ 9034339 (-)
G684494 NA non-coding downstream 87930 8729274 ~ 8729476 (-)
G684488 NA non-coding downstream 139773 8677182 ~ 8677633 (-)
G684409 NA non-coding downstream 214963 8585305 ~ 8602443 (-)
G684405 NA non-coding downstream 346394 8470509 ~ 8471012 (-)
G684467 NA non-coding downstream 352729 8464418 ~ 8464677 (-)
G684509 NA non-coding upstream 102932 8927179 ~ 8927428 (-)
G684514 NA non-coding upstream 128972 8953219 ~ 8953428 (-)
G684553 NA non-coding upstream 201826 9026073 ~ 9026294 (-)
G684554 NA non-coding upstream 214833 9039080 ~ 9039312 (-)
G684555 NA non-coding upstream 215113 9039360 ~ 9039705 (-)
G684493 NA other downstream 93539 8722693 ~ 8723867 (-)
G684182 NA other downstream 906198 7910761 ~ 7911208 (-)
G684080 NA other downstream 1234603 7579404 ~ 7582803 (-)
G684071 NA other downstream 1291752 7506890 ~ 7525654 (-)
G684018 NA other downstream 1404274 7403147 ~ 7413132 (-)
G684929 NA other upstream 1074177 9895316 ~ 9901388 (-)
G686052 NA other upstream 2517369 11341616 ~ 11343496 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006909 khdrbs1a coding NC_007124.7 CM002897.2 45009957 ~ 45022527 (-)