G684405


Basic Information

Item Value
gene id G684405
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8470509 ~ 8471012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU805746
AGGTGTGGAATGACATGAGGGTGAGTAATTGACAGAATTTACATTTTTGGGTGAACTAACCCTTTAAATTTGAATTTTGAAATATGTTCTGGACATGATTTTTTGATTCACTCATACATTTAATAAACTATAACAACAGAATCCTGTGACCAAACCTGAAGGTTCCTCTGTGAAAGTCACCAACACACACTCACAAAAACAATCACATGACTGCTGAAGAATGTCTGTCGGTGTTGAATTGATCATTAGTGGGCAGCGAAGCTCTGATCAGCTGTGCTGTCGTATGCAAAGTGTTCAGACCAGAGAGAGAGAGTTTCTGTTTTGTTGTTTTGTTTTTTGTTTGTATGTATATTTGTTTGTTTTTAGATATACCGGTGCACAAGTGAGAGAGCAACTTGTAGTGCTGGATGTTGTATATTCTCTGTTATGTAATGAAATATTTTAGAGGAAAAATATATTTGAAATATGACTCCGAGATGTATAAATAAACAACCATGAAAGATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU805746 True 504 lncRNA 0.35 1 8470509 8471012

Neighbor

gene id symbol gene type direction distance location
CI01180000_08176665_08187246 FAM160B1 coding downstream 283263 8176624 ~ 8187246 (-)
CI01180000_08123227_08149912 ABLIM1A coding downstream 320597 8123100 ~ 8149912 (-)
CI01180000_08007547_08008834 NA coding downstream 461653 8006735 ~ 8008856 (-)
CI01180000_07995410_08004464 IF3EI, EIF3L, EIF3S6IP coding downstream 465732 7995187 ~ 8004777 (-)
CI01180000_07958912_07969452 NA coding downstream 501057 7958739 ~ 7969452 (-)
CI01180000_08512710_08623387 MDGA1 coding upstream 41698 8512710 ~ 8623387 (-)
CI01180000_08700470_08707817 ZFAND3 coding upstream 228828 8699840 ~ 8707817 (-)
CI01180000_08732856_08740755 BTBD9 coding upstream 261546 8732558 ~ 8741445 (-)
CI01180000_08745988_08748949 GLO1 coding upstream 274909 8745921 ~ 8749376 (-)
CI01180000_08754638_08761116 NA coding upstream 283626 8754638 ~ 8761116 (-)
G684467 NA non-coding downstream 5832 8464418 ~ 8464677 (-)
G684463 NA non-coding downstream 10285 8459937 ~ 8460224 (-)
G684458 NA non-coding downstream 19133 8451099 ~ 8451376 (-)
G684457 NA non-coding downstream 21763 8448411 ~ 8448746 (-)
G684359 NA non-coding downstream 71548 8398746 ~ 8398961 (-)
G684409 NA non-coding upstream 114293 8585305 ~ 8602443 (-)
G684488 NA non-coding upstream 206170 8677182 ~ 8677633 (-)
G684494 NA non-coding upstream 258262 8729274 ~ 8729476 (-)
G684509 NA non-coding upstream 456167 8927179 ~ 8927428 (-)
G684514 NA non-coding upstream 482207 8953219 ~ 8953428 (-)
G684182 NA other downstream 559301 7910761 ~ 7911208 (-)
G684080 NA other downstream 887706 7579404 ~ 7582803 (-)
G684071 NA other downstream 944855 7506890 ~ 7525654 (-)
G684018 NA other downstream 1057377 7403147 ~ 7413132 (-)
G683673 NA other downstream 1707665 6762075 ~ 6762844 (-)
G684493 NA other upstream 251681 8722693 ~ 8723867 (-)
G684929 NA other upstream 1427412 9895316 ~ 9901388 (-)
G686052 NA other upstream 2870604 11341616 ~ 11343496 (-)

Expression


Co-expression Network