RNA id: TU805746


Basic Information

Item Value
RNA id TU805746
length 504
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G684405
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8470509 ~ 8471012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTGTGGAATGACATGAGGGTGAGTAATTGACAGAATTTACATTTTTGGGTGAACTAACCCTTTAAATTTGAATTTTGAAATATGTTCTGGACATGATTTTTTGATTCACTCATACATTTAATAAACTATAACAACAGAATCCTGTGACCAAACCTGAAGGTTCCTCTGTGAAAGTCACCAACACACACTCACAAAAACAATCACATGACTGCTGAAGAATGTCTGTCGGTGTTGAATTGATCATTAGTGGGCAGCGAAGCTCTGATCAGCTGTGCTGTCGTATGCAAAGTGTTCAGACCAGAGAGAGAGAGTTTCTGTTTTGTTGTTTTGTTTTTTGTTTGTATGTATATTTGTTTGTTTTTAGATATACCGGTGCACAAGTGAGAGAGCAACTTGTAGTGCTGGATGTTGTATATTCTCTGTTATGTAATGAAATATTTTAGAGGAAAAATATATTTGAAATATGACTCCGAGATGTATAAATAAACAACCATGAAAGATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805808 lncRNA downstream 5832 8464418 ~ 8464677 (-) True G684467
TU805804 lncRNA downstream 10285 8459937 ~ 8460224 (-) True G684463
TU805799 lncRNA downstream 19133 8451099 ~ 8451376 (-) True G684458
TU805798 lncRNA downstream 21763 8448411 ~ 8448746 (-) True G684457
TU805677 lncRNA downstream 71548 8398746 ~ 8398961 (-) True G684359
TU805750 lncRNA upstream 114293 8585305 ~ 8602443 (-) True G684409
TU805829 lncRNA upstream 206170 8677182 ~ 8677633 (-) False G684488
TU805830 lncRNA upstream 206170 8677182 ~ 8677633 (-) True G684488
TU805836 lncRNA upstream 258262 8729274 ~ 8729476 (-) True G684494
TU805851 lncRNA upstream 456167 8927179 ~ 8927428 (-) True G684509
CI01180000_08176665_08187246.mRNA mRNA downstream 283263 8176624 ~ 8187246 (-) True CI01180000_08176665_08187246
CI01180000_08123227_08149912.mRNA mRNA downstream 320597 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
CI01180000_08007547_08008834.mRNA mRNA downstream 461653 8006735 ~ 8008856 (-) True CI01180000_08007547_08008834
CI01180000_07995410_08004464.mRNA mRNA downstream 465732 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
CI01180000_07958912_07969452.mRNA mRNA downstream 501057 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_08512710_08623387.mRNA mRNA upstream 41698 8512710 ~ 8623387 (-) True CI01180000_08512710_08623387
CI01180000_08700470_08707817.mRNA mRNA upstream 228828 8699840 ~ 8707817 (-) True CI01180000_08700470_08707817
CI01180000_08732856_08740755.mRNA mRNA upstream 261546 8732558 ~ 8741445 (-) True CI01180000_08732856_08740755
CI01180000_08745988_08748949.mRNA mRNA upstream 274909 8745921 ~ 8749376 (-) True CI01180000_08745988_08748949
CI01180000_08754638_08761116.mRNA mRNA upstream 283626 8754638 ~ 8761116 (-) True CI01180000_08754638_08761116
TU805466 other downstream 559301 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 887706 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 944855 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 1057377 7403147 ~ 7413132 (-) False G684018
TU805835 other upstream 251681 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 1427412 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 2870604 11341616 ~ 11343496 (-) True G686052

Expression Profile