RNA id: TU805798



Basic Information


Item Value
RNA id TU805798
length 336
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G684457
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8448411 ~ 8448746 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAAAACTATGTTACAGCCATTTATATGGCAAAATATTTATTAGGTGGGTAGGGGAATATATAATTCATGTATTTATTAAGGTGTAGTTTGTACCTGTGTTTAGGCGTTTTTTATAGGCCTATATAACATATCATAATATAATATCATTTGACAGAGGTAGTGAGTAGCCATGTATGATTTTACCTGTGGTTACCAAGTCTCACTGTGATAATATTTTCATTTAAGCCTAATAATTAATAAAATAATTTTTACCAATAAGAATAATTTTTGCATATGCCTACTAACGCAACATCATTGCTATATAAACCAATGCAGATATTCCAGAAAACGAAAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU805677 lncRNA downstream 49450 8398746 ~ 8398961 (-) True G684359
TU805664 lncRNA downstream 67292 8380724 ~ 8381119 (-) True G684347
TU805662 lncRNA downstream 76487 8371599 ~ 8371924 (-) True G684345
TU805659 lncRNA downstream 79501 8368322 ~ 8368910 (-) True G684343
TU805657 lncRNA downstream 79874 8368199 ~ 8368537 (-) False G684343
TU805799 lncRNA upstream 2353 8451099 ~ 8451376 (-) True G684458
TU805804 lncRNA upstream 11191 8459937 ~ 8460224 (-) True G684463
TU805808 lncRNA upstream 15672 8464418 ~ 8464677 (-) True G684467
TU805746 lncRNA upstream 21763 8470509 ~ 8471012 (-) True G684405
TU805750 lncRNA upstream 136559 8585305 ~ 8602443 (-) True G684409
CI01180000_08176665_08187246.mRNA mRNA downstream 261165 8176624 ~ 8187246 (-) True CI01180000_08176665_08187246
CI01180000_08123227_08149912.mRNA mRNA downstream 298499 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
CI01180000_08007547_08008834.mRNA mRNA downstream 439555 8006735 ~ 8008856 (-) True CI01180000_08007547_08008834
CI01180000_07995410_08004464.mRNA mRNA downstream 443634 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
CI01180000_07958912_07969452.mRNA mRNA downstream 478959 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_08512710_08623387.mRNA mRNA upstream 63964 8512710 ~ 8623387 (-) True CI01180000_08512710_08623387
CI01180000_08700470_08707817.mRNA mRNA upstream 251094 8699840 ~ 8707817 (-) True CI01180000_08700470_08707817
CI01180000_08732856_08740755.mRNA mRNA upstream 283812 8732558 ~ 8741445 (-) True CI01180000_08732856_08740755
CI01180000_08745988_08748949.mRNA mRNA upstream 297175 8745921 ~ 8749376 (-) True CI01180000_08745988_08748949
CI01180000_08754638_08761116.mRNA mRNA upstream 305892 8754638 ~ 8761116 (-) True CI01180000_08754638_08761116
TU805466 other downstream 537203 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 865608 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 922757 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 1035279 7403147 ~ 7413132 (-) False G684018
TU805835 other upstream 273947 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 1449678 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 2892870 11341616 ~ 11343496 (-) True G686052

Expression Profile