RNA id: TU805662


Basic Information

Item Value
RNA id TU805662
length 326
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G684345
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8371599 ~ 8371924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNNNNGCCGCAACACAGACAGGGATTGTGTGCAGCCTGTCGTGTGCTCTTTCTCTCTTTGAAGGCGCTCACTCTTACCAGCCGTAAAAACGGCTTTCAGCGCTCGAAGCGCACCGTACCGGCCGTGAGAACAGCCTTCTGACGCTGTCAAAACAGCTATTTGCTCTATAACGGCAAACGAAACAAAAAACAGAAAATAAAGAGAGGACTTCGACCCCGCTGCTGTGCTGTTCGCCCGCACTCGAAAAAAAAGAGAAGTTCAACCAAAAAGCTTGACTCGTCTTCTAGCAGACACTTGCTTGCAGAGAACAGGAACAACACCGTTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805656 lncRNA downstream 2689 8368199 ~ 8368910 (-) False G684343
TU805659 lncRNA downstream 2689 8368322 ~ 8368910 (-) True G684343
TU805657 lncRNA downstream 3062 8368199 ~ 8368537 (-) False G684343
TU805658 lncRNA downstream 3062 8368322 ~ 8368537 (-) False G684343
TU805585 lncRNA downstream 144679 8226510 ~ 8226920 (-) True G684279
TU805664 lncRNA upstream 8800 8380724 ~ 8381119 (-) True G684347
TU805677 lncRNA upstream 26822 8398746 ~ 8398961 (-) True G684359
TU805798 lncRNA upstream 76487 8448411 ~ 8448746 (-) True G684457
TU805799 lncRNA upstream 79175 8451099 ~ 8451376 (-) True G684458
TU805804 lncRNA upstream 88013 8459937 ~ 8460224 (-) True G684463
CI01180000_08176665_08187246.mRNA mRNA downstream 184353 8176624 ~ 8187246 (-) True CI01180000_08176665_08187246
CI01180000_08123227_08149912.mRNA mRNA downstream 221687 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
CI01180000_08007547_08008834.mRNA mRNA downstream 362743 8006735 ~ 8008856 (-) True CI01180000_08007547_08008834
CI01180000_07995410_08004464.mRNA mRNA downstream 366822 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
CI01180000_07958912_07969452.mRNA mRNA downstream 402147 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_08512710_08623387.mRNA mRNA upstream 140786 8512710 ~ 8623387 (-) True CI01180000_08512710_08623387
CI01180000_08700470_08707817.mRNA mRNA upstream 327916 8699840 ~ 8707817 (-) True CI01180000_08700470_08707817
CI01180000_08732856_08740755.mRNA mRNA upstream 360634 8732558 ~ 8741445 (-) True CI01180000_08732856_08740755
CI01180000_08745988_08748949.mRNA mRNA upstream 373997 8745921 ~ 8749376 (-) True CI01180000_08745988_08748949
CI01180000_08754638_08761116.mRNA mRNA upstream 382714 8754638 ~ 8761116 (-) True CI01180000_08754638_08761116
TU805466 other downstream 460391 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 788796 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 845945 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 958467 7403147 ~ 7413132 (-) False G684018
TU805835 other upstream 350769 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 1526500 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 2969692 11341616 ~ 11343496 (-) True G686052

Expression Profile