RNA id: CI01180000_08745988_08748949.mRNA


Basic Information

Item Value
RNA id CI01180000_08745988_08748949.mRNA
length 875
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01180000_08745988_08748949
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8745921 ~ 8749376 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCTCAATGTATACCTATAAGTTCACTCAGAACACAGGATGTGTAGCCCAGAGCCGTTGATATTTAACGGCTCTGGTGTAGCCTAAATGTGTGAGCCACAGAATCTACATGGCATTTATAGTTTCTCTTAGTTCCTTAACCCTTTTCTTTCTACAATTTTTCCTCAAACAAATATTATAATGTAGAGTCTTATTTAGTTGATGGGACATTTATTTCAATAGATTTATGTAAACACACTTTTACTGAGAATTATTTCGCCCTCTGCCGGTAGAAAAGAAAAATTACACCATCTAAGTTATTTCAACGCCCCTCCCACAGCCACGTCACGCTGCCGACGTTGTGCGCAATGACCACGCCCCCTGCGCGCGATCCTTCCGTCGGACTGTCAGCTGTGTAGTCACCATAAAGCCGAAGCACACTTAAAAATGACCGAGCCTAAAAGTGACCAGGGGCTGACGGACGAAGCAGTCGCCGCTGCATGTAAAGAAGGAAACCCCATCACTAAAGACTTCATGATGCAGCAGACAATGCTGCGGGTTAAGGATCCAGTTAAATCCCTGGATTTTTACACACGCATCCTGGGAATGACGCTGTTACAGAAGTTTGATTTTCCCTCTATGCGATTCACCCTCTACTTTGTGGGTTATGAGGATAAGAAAGAAATCCCTGCAGATGTGAAGGAGAGGACAGCCTGGACGTTCTCCCGCCGAGCCACTATAGAGCTCACCCAGAACTGGGGCTCAGAGACAGATGACAGCCTGTCTTACCATAACGGCAACTCAGACCCAAGAGGCTTTGGTAAATAACATTCATAACACAATTTCTCCCTGTCAGCTGTTATTGAAGTCAGGCTGCACCATATAACTTAATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805836 lncRNA downstream 16445 8729274 ~ 8729476 (-) True G684494
TU805829 lncRNA downstream 68288 8677182 ~ 8677633 (-) False G684488
TU805830 lncRNA downstream 68288 8677182 ~ 8677633 (-) True G684488
TU805750 lncRNA downstream 143478 8585305 ~ 8602443 (-) True G684409
TU805746 lncRNA downstream 274909 8470509 ~ 8471012 (-) True G684405
TU805851 lncRNA upstream 177803 8927179 ~ 8927428 (-) True G684509
TU805859 lncRNA upstream 203843 8953219 ~ 8953428 (-) True G684514
TU805905 lncRNA upstream 276697 9026073 ~ 9026294 (-) True G684553
TU805906 lncRNA upstream 289704 9039080 ~ 9039312 (-) True G684554
TU805907 lncRNA upstream 289984 9039360 ~ 9039705 (-) True G684555
CI01180000_08732856_08740755.mRNA mRNA downstream 4476 8732558 ~ 8741445 (-) True CI01180000_08732856_08740755
CI01180000_08700470_08707817.mRNA mRNA downstream 38104 8699840 ~ 8707817 (-) True CI01180000_08700470_08707817
CI01180000_08512710_08623387.mRNA mRNA downstream 122534 8512710 ~ 8623387 (-) True CI01180000_08512710_08623387
CI01180000_08176665_08187246.mRNA mRNA downstream 558675 8176624 ~ 8187246 (-) True CI01180000_08176665_08187246
CI01180000_08123227_08149912.mRNA mRNA downstream 596009 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
CI01180000_08754638_08761116.mRNA mRNA upstream 5262 8754638 ~ 8761116 (-) True CI01180000_08754638_08761116
CI01180000_08794119_08796998.mRNA mRNA upstream 44743 8794119 ~ 8796998 (-) True CI01180000_08794119_08796998
CI01180000_08817640_08823945.mRNA mRNA upstream 68030 8817406 ~ 8824247 (-) True CI01180000_08817640_08823945
CI01180000_08829933_08835423.mRNA mRNA upstream 80319 8829695 ~ 8835423 (-) True CI01180000_08829933_08835423
CI01180000_08863723_08881179.mRNA mRNA upstream 113912 8863288 ~ 8882290 (-) True CI01180000_08863723_08881179
TU805835 other downstream 22054 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 834713 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 1163118 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 1220267 7506890 ~ 7525654 (-) True G684071
TU805292 other downstream 1332789 7403984 ~ 7413132 (-) True G684018
TU806323 other upstream 1149048 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 2592240 11341616 ~ 11343496 (-) True G686052

Expression Profile