RNA id: TU805851


Basic Information

Item Value
RNA id TU805851
length 250
lncRNA type intronic
GC content 0.44
exon number 1
gene id G684509
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8927179 ~ 8927428 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGAGACAACGGATTAAAATAAATCTCTTTTTCTCTCACATGAAATGCGCTCTCTGATTCACCGGATTTCTCTGAACCAAATGAGTGATGGGCCCAACTGAAAGCAGGTCATACCAACCGCACAACTAACCATGGAACACACACACACACTCACACTCACATACACACAAATAGAGCCGTTCTAACGTGGAACACAAATACTCACGCTTCACACACTCAGCCACTTTACCGTGGAACACTCATTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805836 lncRNA downstream 197703 8729274 ~ 8729476 (-) True G684494
TU805829 lncRNA downstream 249546 8677182 ~ 8677633 (-) False G684488
TU805830 lncRNA downstream 249546 8677182 ~ 8677633 (-) True G684488
TU805750 lncRNA downstream 324736 8585305 ~ 8602443 (-) True G684409
TU805746 lncRNA downstream 456167 8470509 ~ 8471012 (-) True G684405
TU805859 lncRNA upstream 25791 8953219 ~ 8953428 (-) True G684514
TU805905 lncRNA upstream 98645 9026073 ~ 9026294 (-) True G684553
TU805906 lncRNA upstream 111652 9039080 ~ 9039312 (-) True G684554
TU805907 lncRNA upstream 111932 9039360 ~ 9039705 (-) True G684555
TU805770 lncRNA upstream 137501 9064929 ~ 9065544 (-) True G684429
CI01180000_08884283_08892303.mRNA mRNA downstream 34502 8883846 ~ 8892677 (-) True CI01180000_08884283_08892303
CI01180000_08863723_08881179.mRNA mRNA downstream 44889 8863288 ~ 8882290 (-) True CI01180000_08863723_08881179
CI01180000_08829933_08835423.mRNA mRNA downstream 91756 8829695 ~ 8835423 (-) True CI01180000_08829933_08835423
CI01180000_08817640_08823945.mRNA mRNA downstream 102932 8817406 ~ 8824247 (-) True CI01180000_08817640_08823945
CI01180000_08794119_08796998.mRNA mRNA downstream 130181 8794119 ~ 8796998 (-) True CI01180000_08794119_08796998
CI01180000_09031248_09034339.mRNA mRNA upstream 103597 9031025 ~ 9034339 (-) True CI01180000_09031248_09034339
CI01180000_09046542_09058939.mRNA mRNA upstream 118907 9046335 ~ 9058939 (-) True CI01180000_09046542_09058939
CI01180000_09106473_09108762.mRNA mRNA upstream 178320 9105748 ~ 9108762 (-) True CI01180000_09106473_09108762
CI01180000_09117251_09118408.mRNA mRNA upstream 189680 9117108 ~ 9118652 (-) True CI01180000_09117251_09118408
CI01180000_09154162_09158438.mRNA mRNA upstream 226450 9153878 ~ 9158438 (-) True CI01180000_09154162_09158438
TU805835 other downstream 203312 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 1015971 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 1344376 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 1401525 7506890 ~ 7525654 (-) True G684071
TU805292 other downstream 1514047 7403984 ~ 7413132 (-) True G684018
TU806323 other upstream 970996 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 2414188 11341616 ~ 11343496 (-) True G686052

Expression Profile