RNA id: TU805677


Basic Information

Item Value
RNA id TU805677
length 216
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G684359
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8398746 ~ 8398961 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAACACACAAGTTAGCCACTTTATAGTAGAAAATGAAGTTGTGCTTCTGATGTCAGAGGCACTGACACTGTTTTTCATGTTTGATACTGTAAAGCTGCTTGCTTTTAGGCAATCTATTGAATAAAATGCCATGTAAATAAACGTGACGTGACTTTACTGGAGTGCTAATTTGCAGAGCTCATGCTAACATACCCATTTTATTATGATCAGATGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805664 lncRNA downstream 17627 8380724 ~ 8381119 (-) True G684347
TU805662 lncRNA downstream 26822 8371599 ~ 8371924 (-) True G684345
TU805656 lncRNA downstream 29836 8368199 ~ 8368910 (-) False G684343
TU805798 lncRNA upstream 49450 8448411 ~ 8448746 (-) True G684457
TU805799 lncRNA upstream 52138 8451099 ~ 8451376 (-) True G684458
TU805804 lncRNA upstream 60976 8459937 ~ 8460224 (-) True G684463
TU805808 lncRNA upstream 65457 8464418 ~ 8464677 (-) True G684467
TU805746 lncRNA upstream 71548 8470509 ~ 8471012 (-) True G684405
CI01180000_08176665_08187246.mRNA mRNA downstream 211500 8176624 ~ 8187246 (-) True CI01180000_08176665_08187246
CI01180000_08123227_08149912.mRNA mRNA downstream 248834 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
CI01180000_08007547_08008834.mRNA mRNA downstream 389890 8006735 ~ 8008856 (-) True CI01180000_08007547_08008834
CI01180000_07995410_08004464.mRNA mRNA downstream 393969 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
CI01180000_07958912_07969452.mRNA mRNA downstream 429294 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_08512710_08623387.mRNA mRNA upstream 113749 8512710 ~ 8623387 (-) True CI01180000_08512710_08623387
CI01180000_08700470_08707817.mRNA mRNA upstream 300879 8699840 ~ 8707817 (-) True CI01180000_08700470_08707817
CI01180000_08732856_08740755.mRNA mRNA upstream 333597 8732558 ~ 8741445 (-) True CI01180000_08732856_08740755
CI01180000_08745988_08748949.mRNA mRNA upstream 346960 8745921 ~ 8749376 (-) True CI01180000_08745988_08748949
CI01180000_08754638_08761116.mRNA mRNA upstream 355677 8754638 ~ 8761116 (-) True CI01180000_08754638_08761116
TU805466 other downstream 487538 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 815943 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 873092 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 985614 7403147 ~ 7413132 (-) False G684018
TU805835 other upstream 323732 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 1499463 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 2942655 11341616 ~ 11343496 (-) True G686052

Expression Profile