RNA id: TU805656


Basic Information

Item Value
RNA id TU805656
length 712
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G684343
representative False

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8368199 ~ 8368910 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTGTCTCTCATCTTCCTCTTGACAATACCCCATAGATTCTCTATGGGGTTCAGGTCAGGCGAGTTTGCTGGCCAATCAAGCACAGTAACACCATGGTCATTGAACCAGCTTTTGGTACCTTTGGCAGTGTGGGCAGGTGCCAAATCCTGCTGGAAAATGAAATCAGCATCTCCATAAAGCTTGTCAGCAGAAGGAAGCATGAAGTGCTCTAAAATTTCCTGGTAGATGGCTGCGCTGACTGTGGACTTCAGAAAACACAGTGGACCAACACCAGCAGATGACATGGCAGCCCAAATCATCACTGACTGTGGAAACTTCACACTGGACTTCAAGCAACATGATTTCTGTGCCTCTCCACTCTTCCTTCAGACTCTGGGACCTTGATTTCCAAATGAAATGCAAAATTTACTTTCATCTGAAAAGAGGACTTTGGACCACTGAGCAACAGTCCAGTTCTTTTTCTCCTTAGCCCAGGTAAGACGCTTCTGACGTTGTCTTTGGTTCAGAAGTGGCTTGGTACGTGGAATGTGACAGTTGTAGCCCATTTCCTGAAGACGTCTGTGTGCGGTGGCTCTTGATGCACTGACTCCAGCTTCAGTCCACTCCTTTTGAAGCTCTCCTAAGTTCTTAAATCAGCTTCGCCTGACAATCTTCTCAAGCCTGCGGTCATTCCTTTCACTTGTACACCTTTTTCTACCACACTTTTTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805585 lncRNA downstream 141279 8226510 ~ 8226920 (-) True G684279
TU805578 lncRNA downstream 151684 8216305 ~ 8216515 (-) True G684272
TU805571 lncRNA downstream 169545 8198431 ~ 8198654 (-) True G684265
TU805531 lncRNA downstream 192871 8169567 ~ 8175328 (-) True G684231
TU805534 lncRNA downstream 204677 8159316 ~ 8163522 (-) True G684234
TU805662 lncRNA upstream 2689 8371599 ~ 8371924 (-) True G684345
TU805664 lncRNA upstream 11814 8380724 ~ 8381119 (-) True G684347
TU805677 lncRNA upstream 29836 8398746 ~ 8398961 (-) True G684359
TU805798 lncRNA upstream 79501 8448411 ~ 8448746 (-) True G684457
TU805799 lncRNA upstream 82189 8451099 ~ 8451376 (-) True G684458
CI01180000_08176665_08187246.mRNA mRNA downstream 180953 8176624 ~ 8187246 (-) True CI01180000_08176665_08187246
CI01180000_08123227_08149912.mRNA mRNA downstream 218287 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
CI01180000_08007547_08008834.mRNA mRNA downstream 359343 8006735 ~ 8008856 (-) True CI01180000_08007547_08008834
CI01180000_07995410_08004464.mRNA mRNA downstream 363422 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
CI01180000_07958912_07969452.mRNA mRNA downstream 398747 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_08512710_08623387.mRNA mRNA upstream 143800 8512710 ~ 8623387 (-) True CI01180000_08512710_08623387
CI01180000_08700470_08707817.mRNA mRNA upstream 330930 8699840 ~ 8707817 (-) True CI01180000_08700470_08707817
CI01180000_08732856_08740755.mRNA mRNA upstream 363648 8732558 ~ 8741445 (-) True CI01180000_08732856_08740755
CI01180000_08745988_08748949.mRNA mRNA upstream 377011 8745921 ~ 8749376 (-) True CI01180000_08745988_08748949
CI01180000_08754638_08761116.mRNA mRNA upstream 385728 8754638 ~ 8761116 (-) True CI01180000_08754638_08761116
TU805466 other downstream 456991 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 785396 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 842545 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 955067 7403147 ~ 7413132 (-) False G684018
TU805835 other upstream 353783 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 1529514 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 2972706 11341616 ~ 11343496 (-) True G686052

Expression Profile