RNA id: TU805571


Basic Information

Item Value
RNA id TU805571
length 224
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G684265
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 8198431 ~ 8198654 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGTTACCCCATATACGCTTAACCGGAAGAAGCAGAAGCGGCGACTGTGGCATAATAAAAGTTCCACTGCTCGTGTGTGTCGCGTTCGTCTCTCATTAGCAATCGCTCCAGCGGTCTTGTTCAGCTCTCACAGCACTCGGCCATGCTCTGCTTCATACTACAGTAACATTAATAATCTCATTCATGAACATGATTTCTACCCGAGTCCGTCATATTCTTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805531 lncRNA downstream 23103 8169567 ~ 8175328 (-) True G684231
TU805534 lncRNA downstream 34909 8159316 ~ 8163522 (-) True G684234
TU805508 lncRNA downstream 174208 8005951 ~ 8024223 (-) True G684215
TU805488 lncRNA downstream 225226 7969963 ~ 7973205 (-) True G684200
TU805477 lncRNA downstream 280266 7917890 ~ 7918165 (-) True G684189
TU805578 lncRNA upstream 17651 8216305 ~ 8216515 (-) True G684272
TU805585 lncRNA upstream 27856 8226510 ~ 8226920 (-) True G684279
TU805656 lncRNA upstream 169545 8368199 ~ 8368910 (-) False G684343
TU805657 lncRNA upstream 169545 8368199 ~ 8368537 (-) False G684343
TU805658 lncRNA upstream 169668 8368322 ~ 8368537 (-) False G684343
CI01180000_08176665_08187246.mRNA mRNA downstream 11185 8176624 ~ 8187246 (-) True CI01180000_08176665_08187246
CI01180000_08123227_08149912.mRNA mRNA downstream 48519 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
CI01180000_08007547_08008834.mRNA mRNA downstream 189575 8006735 ~ 8008856 (-) True CI01180000_08007547_08008834
CI01180000_07995410_08004464.mRNA mRNA downstream 193654 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
CI01180000_07958912_07969452.mRNA mRNA downstream 228979 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_08512710_08623387.mRNA mRNA upstream 314056 8512710 ~ 8623387 (-) True CI01180000_08512710_08623387
CI01180000_08700470_08707817.mRNA mRNA upstream 501186 8699840 ~ 8707817 (-) True CI01180000_08700470_08707817
CI01180000_08732856_08740755.mRNA mRNA upstream 533904 8732558 ~ 8741445 (-) True CI01180000_08732856_08740755
CI01180000_08745988_08748949.mRNA mRNA upstream 547267 8745921 ~ 8749376 (-) True CI01180000_08745988_08748949
CI01180000_08754638_08761116.mRNA mRNA upstream 555984 8754638 ~ 8761116 (-) True CI01180000_08754638_08761116
TU805466 other downstream 287223 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 615628 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 672777 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 785299 7403147 ~ 7413132 (-) False G684018
TU805835 other upstream 524039 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 1699770 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 3142962 11341616 ~ 11343496 (-) True G686052

Expression Profile