CI01000004_01352499_01377500 (SLC1A7A, SLC1A7)


Basic Information

Item Value
gene id CI01000004_01352499_01377500
gene name SLC1A7A, SLC1A7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1352073 ~ 1377515 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01352499_01377500.mRNA
AGTGGACGTGTCACCATGGCGTTGGGTGCGGTGTGGAGCCGCGTTAAAAATGTGTGCCAACAGAACGGCCTCCTCATCTTATCAGTCTTGGCCGTGGTTATCGGATGCCTACTGGGATTCTTCCTGCGCTCCAAACACCTCTCTGAGCAGGAGGTGAAGTACTTCCAGTTCCCAGGGGAGTTACTGATGCGGATGTTGAAGATGCTTATCCTGCCTCTAGTGGTCTCCAGTTTTAAAATAGATTCTCCTCAGTGTTATGTGAGGTGCTTCAAAGCTCCAGATGGTCTGGAAGTCCTGCTGCCAGCCTATAGCAGGAACACATGCAGGTTAACAGAAAAACCAGAAAGGAATGACAGATTCAGTGATGGCACCATCAGGCCATATCAAAGTCTGTGGCTTGTTTTTAAGCTTTGCCTGTCTCTTTCAGTTATCTATGGAGCGTTGGATGCTAAGTGCTCCAGTCGACTGGGCATCATGACAATTTCTTATTATCTGTGGACGACCTTTGTGGCTGTGGTGGTGGGCATCGTCATGGTCATCATCATCCACCCGGGTGGAGCTGCCCAGAAAGAGGACTCAGAGGACAGCGGGAAGCCCATCATGAGCTCAGCTGATGCTCTACTGGACCTTATCCGCAACATGTTCCCAGCCAACTTGGTCCAAGCAACTTTTCAACAATATCGCACGAAAAGCATCCCTATCATGAAGCCTAAACCCACCATCAGTCAGGACATACAAGAGACCACCACCAAACGGGTCTTCATTTATGGAATCCAGGATGAGAATGGCACAGACATCCAGAACTTCTCCCTTGACCTGACGCCACCTCCCGATGTGGTCTTCCGAACGCTTCCTGGCACCAGTGAAGGCATGAACGTCCTGGGTATCGTGATCTTCTCAGCTACTATGGGTATCATGCTTGGAAGAATGGGACCAAATGGCAGCGCTCTCGTCAACTTCTGTCAGAGTCTGAATGAAGCTGTGCTGAAAATTGTGGCCATTGTTATATGGTACTTCCCGTTTGGGATTGTGTTTCTGGTGGCTGGAAAGATCTTGGAAATGGATGACCCCTCGGCTATGGGGAAGAAACTGGGCTTCTATGCCATCACTGTGGTCATGGGGCTGGTGCTTCATGGCCTGTTCATCCTGCCTTCCATGTATTTCTTCATTACGAAAAAGAGCCCCATCGTCTACATCCGAGGGATTTTACAGGCTCTTCTTATCTCATTAGCTACTTCATCCAGCTCTGCCACACTGCCTATCACCTTTAAGTGCCTCCTGGAGAACAACCACATCGACCGACGCATCATTCGCTTCGTGCTTCCTGTGGGTGCTACTATCAACATGGACGGCACTGCCCTATATGAAGCCGTGGCAGCCATCTTTATCGCTCAAGTCAACAACTATGAGCTGGACTTTGGGCAGATCATCACCATCAGCATCACTGCTACAGCAGCCAGTATCGGTGCTGCCGGCATTCCACAGGCCGGCCTGGTGACCATGGTGATAGTGTTAACCTCAGTGGGACTTCCTACAGATGACATCACTCTAATTATCGCTGTGGATTGGGCCCTGGATCGGTTCAGGACGATGGTGAACGTGATGGGTGATGCTCTGGCCACAGGAATCATGGCACACATATGCAGAAAAGATTTTGTGAAGGAGGGCGAGGAGATTCCTCTCATCTGTGAGACCAAGCCTATGATCAGCATCCAGCAGATGATGTCCTATCAGAAAAACGGCTGCTTCCAGCCCCCTCCGACAGGCCCCGTGAGGAAACCCGAACACCTGTCGCCTGACGTGGCCCGTCTAATGCAGCTGGAAGAGGGCATCAAGCCCACCGACAAGAAGAAGTCCCCTCACCTGTCTCCACACCATTATAAAAGAGACCATAAAGACAAAGACCACTGTACCATTGACATGAACGGTCTGGAGACCAATGTCTAGACTCATTCAGAGACCAAAACAAAGCTGCAAGATGCCAGCCGTTCTCTTTCTCTACCTTTGGATTTTGAGCACATGTGTGAATGTAGGGAATCTGGGCCGTAAACCTTCGGACCTACTAAGGGGATTTTCTGAACCCTGTTGACCCCCAGATGGCTGAGCGTCTCATTGAAACGTGTGGAGAAAGATCGGTGTACTTATGAGTGCTGTCGTTATTATGTCCTTTCCATGTGACCTACAGGAGAGAAGAACAACAATCTTAATGGACAGCTTGTCTGTGGAATTTGGATATGTGTTGTTTTATTCCAGTATATTATACGTCATATGCTGCTGAGATTGTTGCATTTTTTTTATTTATTTTTTTCAAGGCTTTGTCTGTTTAAATCCTCTCTTTCACTAACAGAGAGAGAGAGAGCGAGAGAGAAAAAA

Function

symbol description
slc1a7a Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cerebellum; optic tectum; and telencephalon. Orthologous to human SLC1A7 (solute carrier family 1 member 7).
slc1a7 Predicted to enable anion transmembrane transporter activity. Involved in neurotransmitter reuptake. Predicted to be integral component of postsynaptic membrane. Predicted to be active in glutamatergic synapse. Predicted to be integral component of presynaptic membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05618 SLC1A7, EAAT5; solute carrier family 1 (glutamate transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01352499_01377500.mRNA True 2373 mRNA 0.49 14 1352073 1377515

Neighbor

gene id symbol gene type direction distance location
CI01000004_01311508_01319203 ALDH9A1B, ALDH9A1 coding downstream 32870 1311055 ~ 1319203 (-)
CI01000004_01280983_01292761 FZR1B coding downstream 59312 1280585 ~ 1292761 (-)
CI01000004_01252844_01260204 NA coding downstream 91719 1252652 ~ 1260354 (-)
CI01000004_01230991_01235864 NA coding downstream 116209 1230896 ~ 1235864 (-)
CI01000004_01199771_01204393 OTOL1A coding downstream 145824 1199491 ~ 1206249 (-)
CI01000004_01394018_01397517 TMEM125B coding upstream 16454 1393969 ~ 1397517 (-)
CI01000004_01404265_01425424 NA coding upstream 26750 1404265 ~ 1425424 (-)
CI01000004_01440447_01443088 NA coding upstream 62256 1439771 ~ 1443292 (-)
CI01000004_01554696_01564701 NA coding upstream 177141 1554656 ~ 1564701 (-)
CI01000004_01605140_01622364 NA coding upstream 227037 1604552 ~ 1622364 (-)
G25527 NA non-coding downstream 18084 1332563 ~ 1333989 (-)
G25524 NA non-coding downstream 21320 1330371 ~ 1330753 (-)
G25525 NA non-coding downstream 27783 1321082 ~ 1324290 (-)
G25451 NA non-coding downstream 219496 1132270 ~ 1132577 (-)
G25515 NA non-coding upstream 49177 1426692 ~ 1427877 (-)
G25511 NA non-coding upstream 54332 1431847 ~ 1435337 (-)
G25572 NA non-coding upstream 71620 1449135 ~ 1449927 (-)
G25561 NA non-coding upstream 170236 1547751 ~ 1552872 (-)
G25601 NA non-coding upstream 197364 1574879 ~ 1575219 (-)
CI01000004_01773383_01774888 INSL5B other upstream 395525 1772928 ~ 1774942 (-)
G26788 NA other upstream 1896918 3267683 ~ 3275721 (-)
G27746 NA other upstream 3800712 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 4242868 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 5157312 6538904 ~ 6541252 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location