CI01000004_01404265_01425424


Basic Information

Item Value
gene id CI01000004_01404265_01425424
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1404265 ~ 1425424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01404265_01425424.mRNA
ATGGCTAAAGTAGTGGCACAGTCTCATTATACATTCGGATTGCGGACAGGAGTGAGGAATAATTTGTTGTATTATGATGAGCAAACCATCATATTTCCGTGCGGAAACAACTGTGTGCGCTATAATATCGATCAGAAATGGCAGAAGTTTATTCCAGGTATAGAGAGAAGTCAGGGCATGAAGGCTTTGGCCATCAGCACAAACAAGCGTTATATGGCTGTGTCTGAATGTGGAGAGAAAGCCACCATCACTGTGTTTGATCTGCAGCATGAGCAGAACAGGAAGAGGAAGGTGTTGACTGGAGGAGAGATCCCGGTGGATGAGTTTGTCTGCATGGCCTTTTCCCCCGACTCAAAGTATCTGATCGGTCAGGCAGGTGGGCCAGACTGGACACTCTTTCTCTGGATGTGGGAAAAGAAGAAGGTGATGGCCACTGTGAAAACAAGCAGCAGTGGCCCTATAAACCAGGTCAGCTTCAACCCTCAGGACAACACACAGATCTGTGTGAGCGGCAACGGGGTGTTCAAGATCTTCCGCTATGCTGGAGAAACCCTGAAACAGTCCAGCACATTTAAAACAGACTCCCAGAACTTCCTGTGCCACACCTGGATATCCACGGAGAAGGTGATTGCCGGCACAGAGACAGGTCAGCTGATGATGTTTGAATCATGTCGCCTACGTTGGGAGACGAGTGTGGCATCTGTGCAGAAGGTTAAGAGTCAGTCAGAAAAGCAGGACTCAAATGAGCCCTCCTCCACCCTGCCGCGGGTGACAGCCATTGTAGGTTATTCTAGTGGATTTGTTTGCTCCGCTGGTCCTGGAACTGTGTGTTTGTTTGAGAAAATAGAAGAAGACCAGTACAAGAAGACCAAAGACATAAAGATTCCTCCAGAGGTGTTCAGTAATGATCCCAGTTCTGCAGAGCAGCAGGAAATCAGTACTCTGTGCATTAGTCCATCAGAGGACACCCTGGCTGCCAGTACAGACCGCGGGCAGCTCTACAGCATCAATCTCTCCGTAGTTGATTTAGCAAAGTCGGTGCTGGGCCAGGCTGTGTCAAAACAGAGGCTGGCCTGTTGGGCCATCAGGATTGTTGAGGTGGCATATACCAGCGCTGGTATACCTTCACCTGAAGGTGTGGTAGCACATTGCACCAGGGGAATGGCTGCCTCCTGGGCACTATTCAGATGTGTGCCTTTAGAGGAGGGTGATCATGCTCATTTTGAGTACCTGTCTCAATCGTTCCATTCCAGCATTATCACCGGTTTGTCCACCTGCATCCGCAAACCGCACATTGCCACCTGTTCACTGGACCGCTCAGTGCGCATCTGGAACTTTGAGACCAATGATTTAGAGATGTATAAGGAGTTCCAGGAGGAAGCCTACAGCATAGCTCTTCACCCCACTGGACTCTACATCCTGGTGGGATTCTCAGACAAACTCCGTTTCATGACTCTGCTCATCGATGACATCAGGACTTTGAAGGAGTTCACTGTACGCAGTTGCCGTGAGTGTGTGTTCAGCAATGGAGGCCACTTGTTTGCTGCTGTCAATGGAAATGTGATCAACATCTACTCCACTACCACATTTGAGGACGTCCTGAATCTGAAGGGACACAATGAAAAAGTGCGAGCCATAGCATTCAGTGCAGATGACAGTCGTCTTGTGTCGTGTGGCATGGATGGGGCCGTGTATGAGTGGAATACTCTCAGCGGTACCCGAGAGTCTGACAGCGTGCTCAAGACCTGCAGCTACACAGGGGTCACCATCTCCCCTGACGCAAAGACATTCTTTGCTGTTGGGACAGACTGCACTCTGAAGGAAATCCAAAACAGTCAGATCAAAAGTGAAGTGCCTTCAGGTCATGTGGTTTGCACCACTGTTGCTATGTCTCGTTCAGGACGAGCTATCTTCATTGGAACCTCCACTGGGACGGTGAGGGTCGTCAAATACCCTCTACTCATCCAGAATGACTGGCTAGAGTACCAGGCCCATGCTGGCCCTGTCACTAAGATGGTTATCACTTTTGATGACCAGTTTCTCCTAACAGTCTCAGAAGACGGCTGTCTTTTCATCTGGAAAATCATTGACAAAGAGGGACAAGGATTGAAAAGAGAGAAGGAATTAATATACACAGAAGAGATCCTTGTCACCAAATTAGACCTTGAAGAAAAGAATAAAAAGATTCTGGACCTGAGCACAAGAGTGGATGAGCTCCAGAAGTATAACAAGCACCAGCTCAGCCTCATGGACATTAACTACAAGAATTACATCAATGAACTCACTGAAAAATGTCACCAACAGATCAGTTCACTAAATGCTGAGAAAGAGGTCATGAAAACAGAAAAAGAGAAACAGCAAGCCGCCCATGTTAAAGCTCTGTCAGAAATCTTAGAGAAACATGATAAAGAGCTGCAGGACATGGAGTCGGCCAATAACCAGAAGCTCATGTTGGAATATGAGAAATACCAGGAGCTACAACTGAAGCTTCATAGAGATCAGCAGGAATGTGAGCAGCAGCTGCACAGCATGGAGGAGAGCAAGACCCGAGCCCTGGAGGAGATGATGCAGTCTTATGAGGCAAAGCTGGAAGAGAAGACAAAGCTGTTGAACCAGTTTCAGGTTGAATCCCAGAAGCAGGTTCAGGAATTTGAGGAATACATAAAGCAAGTGGAGGTGGACGCAGATATCGAAATCCATGACATCCGCATGAAATACGAGCAAAATCTTAGAGAAGAAAAAAAAGCCAATTCTATGCTCAAAGTGGAATTAGATACCACAACAAAGTCGTTTCATGGCCTGCAGAAGGAAATTGATAACAGGAACTTGGAGATTGAGAAACTGAAGCAGGAAGTGCAAAAGCTGCAGGCGGTGATCAAATCACTGGAGAACGACATCACTAGGCTGAAGACCGAAATTAAGAATAAAGATGAAATTATGCAGGACAAGGAAAAGAGCATCTTAGATCTGAATAAGTTGAATACCTTACTTAACAAATCACTCGAAGTGATGAAGCACAAGGCTGAATTTATGGAGGAGGAGATTGCGCCAAAAGACAGTCAAATCGAAGAACTGAAGGAGCAGATGCAGGAGATGGAGGGAGAGTTGAAGGAGTTCCATAAGACGAACACACAACTGGAACTGAAAATTGATGAACTGAACTTGAAATTGAAAACCAAAGACAAAGAAATACACAAAGAAATGAAGAAG

Function

NR:

description
WD repeat-containing protein 65

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01404265_01425424.mRNA True 3210 mRNA 0.47 19 1404265 1425424

Neighbor

gene id symbol gene type direction distance location
CI01000004_01394018_01397517 TMEM125B coding downstream 6748 1393969 ~ 1397517 (-)
CI01000004_01352499_01377500 SLC1A7A, SLC1A7 coding downstream 26750 1352073 ~ 1377515 (-)
CI01000004_01311508_01319203 ALDH9A1B, ALDH9A1 coding downstream 85062 1311055 ~ 1319203 (-)
CI01000004_01280983_01292761 FZR1B coding downstream 111504 1280585 ~ 1292761 (-)
CI01000004_01252844_01260204 NA coding downstream 143911 1252652 ~ 1260354 (-)
CI01000004_01440447_01443088 NA coding upstream 14347 1439771 ~ 1443292 (-)
CI01000004_01554696_01564701 NA coding upstream 129232 1554656 ~ 1564701 (-)
CI01000004_01605140_01622364 NA coding upstream 179128 1604552 ~ 1622364 (-)
CI01000004_01626984_01627238 NA coding upstream 200792 1626216 ~ 1627238 (-)
CI01000004_01758554_01762415 NA coding upstream 332998 1758422 ~ 1762415 (-)
G25527 NA non-coding downstream 70276 1332563 ~ 1333989 (-)
G25524 NA non-coding downstream 73512 1330371 ~ 1330753 (-)
G25525 NA non-coding downstream 79975 1321082 ~ 1324290 (-)
CI01000004_01230991_01235864 NA non-coding downstream 167034 1230896 ~ 1235864 (-)
G25451 NA non-coding downstream 271688 1132270 ~ 1132577 (-)
G25515 NA non-coding upstream 1268 1426692 ~ 1427877 (-)
G25511 NA non-coding upstream 6423 1431847 ~ 1435337 (-)
G25572 NA non-coding upstream 23711 1449135 ~ 1449927 (-)
G25561 NA non-coding upstream 122327 1547751 ~ 1552872 (-)
G25601 NA non-coding upstream 149455 1574879 ~ 1575219 (-)
CI01000004_01773383_01774888 INSL5B other upstream 347616 1772928 ~ 1774942 (-)
G26788 NA other upstream 1849009 3267683 ~ 3275721 (-)
G27746 NA other upstream 3752803 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 4194959 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 5109403 6538904 ~ 6541252 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015281 cfap57 coding NC_007113.7 CM002886.2 13462305 ~ 13673494 (+)
bowfin (Amia calva) AMCG00020974 NA coding CM030127.1 CM030127.1 39094497 ~ 39096651 (-)