CI01000004_03070803_03073454 (LHX8, LHX8A)


Basic Information

Item Value
gene id CI01000004_03070803_03073454
gene name LHX8, LHX8A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3070616 ~ 3073481 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03070803_03073454.mRNA
AGTGTGTGTATTCGAGCTGCTCTCGTCATGCCCGCGAGCTGTGGAGGTTCAGTCCTCTACACACCGCACACCATACAGCCGCCTCAGGATAAAGAGCTGTTTGAGGAGGTATCGTGTTCGTCGTCGCTTTCTTTGTCGCCCAGCTCTTCACCTCATGCCATGACAGAGAAAGCCATCTGTACCAGCTGTGGCACCGAGATCGTCGACAAATATCTGCTCAAGGTGAACGACATGTGCTGGCACGTGAGATGCCTGTCGTGCAGCGTGTGCCAAACGTCTCTGGGCAGACACATCAGCTGCTATATAAAAGAAAAGGAGATATTCTGTAAATTGGACTACTTCAGGAAATATGGAACACGTTGCGCTCACTGTGGCAGGAACATCCATTCAAACGACTGGGTCCGGAGAGCAAAAGGGAACACCTACCACCTGGCTTGTTTTGCTTGCTTCTCCTGCAAGAGACAGCTGTCCACAGGAGAAGAGTTCGCCTTGGTGGATGAGAGGGTCCTGTGTCGTGTGCACTACGACTGCATGTTGGACAACCTCAAACGTGCCATGGAGAATGGAAAAGGAGTGAATGTGGAGGGAGCTGTTCCCTCAGAGCAGGAAGTAAATCAGCCTAAACCAGCCAAGAGGGCACGCACAAGTTTCACAGCTGACCAGCTACAGGTTTGGTTCCAGAACTGTCGAGCTCGTCATAAGAAGCATGTTAGCCCAAATCACTCCTCAGCCACACCAGTGTCATCTCTGCAGTCTGCTCAACTCACTCCTCCTCTAATAGATGATCTTCAGTACACTGCTTTTGCCCCTGTGGACACCCCTATGCTGACTGCGCTACACTCCTATATGGATGCCTCTCTTGCCTCACTCGATGACACAGCTGCCCATCAGCCATGCCTGAGACGCCCACCACGGTCGCTGCCGCCGCCGCCACATGGTCAGGTCAGAGTCCAGAGGACAGCATGAGGAAATACTGATTCTTCTTTTGACTGAGTCTTGAACAAGACCCATGCTACTTTATCTTTCATGGGCACTTACTGAAGGATATCCGTCTTGCAATGATCGAAATTGAAAAGTCTCACTGTAATTGTGAAAAGAGCCTGAAGTTTTTGTTTAATATATATTATATATATCTATATAGTGATGGAATAAA

Function

symbol description
lhx8a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in forebrain neuron development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; dental mesenchyme; and pharynx. Orthologous to human LHX8 (LIM homeobox 8).
lhx8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in forebrain neuron development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within animal organ development and learning or memory. Predicted to be located in female germ cell nucleus. Predicted to be part of chromatin. Predicted to be active in nucleus.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09375 LHX6_8; LIM homeobox protein 6/8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03070803_03073454.mRNA True 1153 mRNA 0.49 7 3070616 3073481

Neighbor

gene id symbol gene type direction distance location
CI01000004_02953160_02955378 NA coding downstream 115126 2953146 ~ 2955490 (-)
CI01000004_02834634_02863535 GREB1L coding downstream 207018 2832744 ~ 2863598 (-)
CI01000004_02812936_02825192 TROVE2 coding downstream 245424 2812853 ~ 2825192 (-)
CI01000004_02777722_02810321 CDC73.S, CDC73 coding downstream 260295 2777722 ~ 2810321 (-)
CI01000004_02664483_02667653 PRTFDC1 coding downstream 402963 2664483 ~ 2667653 (-)
CI01000004_03106070_03109051 NA coding upstream 32561 3106042 ~ 3109051 (-)
CI01000004_03133701_03141953 ACOT11, ACOT11A coding upstream 60193 3133674 ~ 3141979 (-)
CI01000004_03187077_03196194 MRPL37 coding upstream 113596 3187077 ~ 3196198 (-)
CI01000004_03204599_03205569 TCEANC2 coding upstream 131091 3204572 ~ 3206068 (-)
CI01000004_03214098_03222707 GLMNA, GLMN coding upstream 140617 3214098 ~ 3222707 (-)
G26714 NA non-coding downstream 2083 3020161 ~ 3068533 (-)
G26691 NA non-coding downstream 103631 2965700 ~ 2966985 (-)
G26690 NA non-coding downstream 105026 2965251 ~ 2965590 (-)
G26689 NA non-coding downstream 105437 2964897 ~ 2965179 (-)
G26673 NA non-coding downstream 132135 2938004 ~ 2938481 (-)
G26751 NA non-coding upstream 43305 3116786 ~ 3117281 (-)
G26752 NA non-coding upstream 46469 3119950 ~ 3122260 (-)
G26744 NA non-coding upstream 59075 3132556 ~ 3132765 (-)
G26754 NA non-coding upstream 98929 3172410 ~ 3179358 (-)
G26820 NA non-coding upstream 141409 3214890 ~ 3215202 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1295675 1772928 ~ 1774942 (-)
G26788 NA other upstream 200952 3267683 ~ 3275721 (-)
G27746 NA other upstream 2104746 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2546902 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3461346 6538904 ~ 6541252 (-)
G29388 NA other upstream 3557812 6631293 ~ 6631907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location