G26691


Basic Information

Item Value
gene id G26691
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2965700 ~ 2966985 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU30104
TGTGTGGTATTTTTTATTTTATAATGTCCTCCCTGTGCTGGGCTGGTGCTGTGCTTTGAATATCTTTTCTATCTGATGAGCTGTGGAATGAGGTGCTGCGATGGCAAACAATAAATTGAAAATCCATTTCTTCCTCCCTGCAGGCCTCATGTTCTGCTCTCTATCCAAAATCTCAAATGCAACCTTAGCAACCTATTCAAATCTCTGCTCTCATTTGTGTGAAAGGTCATAAAGAGCTAAACCTGAGACATGTCAATCACTTTAAGCAGCTGCTGAAGGGTGGTCTGTACCTTAGACATGGCATTTTGAATAGGGTTGTCCATTCCCTGTCTCACATTACTGCAGGATTGCAAATTGAAAGCTGCATAAAATGCTACTATGTTTTCTCTATATGCAATGGCTCAGGATGTAAAATGTGATTTAAAGGGTTAGTTCACCCAAAAAATTCTGTCGTTTATTACTCACCCTCATGTCGTTCCACACCCGTAAGACCTTCGTTTATCTTCGGAAAACAAATTAAAAGGTGGGGTATGTATTTTTTTCAACAACGCTGTTGGACATTGTTGATATTTGAAATCAACCCAAACAAACCTACCCCTCTCTTCATTGCTCCGCCTCTAAAACTAACCCTCCAATCCTAACCACCCTGCTCCGAGTCGGTCTCGAACCCCGGCCCGTCTGCTGCTGGCAGGCGAGGCAAGTGCACTGACAATGATGGCAAACACCACATTCTCTAGCATTCGTCAGTGTGCAGTGGTTTACATGTTCAACTCTCACTATCTGGCCACTGTTACACACGCAATGCGAGAGTGGGTGTCTATCACAGCTGACGCGCAACAAAATGCTTCACAAAAAATAAAGCGCAGATGATGAACAAACGAGAAGAAAGCACAAAAAATGAACGTACAGTACGCAAGAGTAAATACAAACAAGGGTTCGTTGTTAGTCGCCAACAGCACAGCAGCTCCAGACAATCAATGACACTCAAACCCAGTGTTACTCACATGTGAAGCAGAATCAAAGCAGCCTCCGCGTCTGTTTTCAGGCCTTCCCGCTTAGCTCTCTCCAGCGCTGGAAAGCTTTTCTAATATTAACGCGGGTCCTAAAGCGCTTGCCCAGTCATAAACCTTCATTCCAGTGATATTCTTTTGAGCTCTTTTGTATTGTGTCTCATCATCTCTCTTTCTGCGTTTTTAAAAAAAAGCAAAAATAAAATAGCGACTTAATTCATCAAATTTGTCTCTCTTCTGTCATTCTGCTACGCTATTTTCGTTGCAGCGCTTCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU30104 True 1286 lncRNA 0.42 1 2965700 2966985

Neighbor

gene id symbol gene type direction distance location
CI01000004_02953160_02955378 NA coding downstream 10210 2953146 ~ 2955490 (-)
CI01000004_02834634_02863535 GREB1L coding downstream 102102 2832744 ~ 2863598 (-)
CI01000004_02812936_02825192 TROVE2 coding downstream 140508 2812853 ~ 2825192 (-)
CI01000004_02777722_02810321 CDC73.S, CDC73 coding downstream 155379 2777722 ~ 2810321 (-)
CI01000004_02664483_02667653 PRTFDC1 coding downstream 298047 2664483 ~ 2667653 (-)
CI01000004_03070803_03073454 LHX8, LHX8A coding upstream 103631 3070616 ~ 3073481 (-)
CI01000004_03106070_03109051 NA coding upstream 139057 3106042 ~ 3109051 (-)
CI01000004_03133701_03141953 ACOT11, ACOT11A coding upstream 166689 3133674 ~ 3141979 (-)
CI01000004_03187077_03196194 MRPL37 coding upstream 220092 3187077 ~ 3196198 (-)
CI01000004_03204599_03205569 TCEANC2 coding upstream 237587 3204572 ~ 3206068 (-)
G26690 NA non-coding downstream 110 2965251 ~ 2965590 (-)
G26689 NA non-coding downstream 521 2964897 ~ 2965179 (-)
G26673 NA non-coding downstream 27219 2938004 ~ 2938481 (-)
G26658 NA non-coding downstream 57394 2906287 ~ 2908306 (-)
G26656 NA non-coding downstream 73400 2891828 ~ 2892300 (-)
G26714 NA non-coding upstream 53176 3020161 ~ 3068533 (-)
G26751 NA non-coding upstream 149801 3116786 ~ 3117281 (-)
G26752 NA non-coding upstream 152965 3119950 ~ 3122260 (-)
G26744 NA non-coding upstream 165571 3132556 ~ 3132765 (-)
G26754 NA non-coding upstream 205425 3172410 ~ 3179358 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1190759 1772928 ~ 1774942 (-)
G26788 NA other upstream 307448 3267683 ~ 3275721 (-)
G27746 NA other upstream 2211242 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2653398 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3567842 6538904 ~ 6541252 (-)
G29388 NA other upstream 3664308 6631293 ~ 6631907 (-)

Expression


Co-expression Network