LOC122335659 (LOC107596237,LOC107754594,LOC107687905)


Basic Information

Item Value
gene id LOC122335659
gene name LOC107596237,LOC107754594,LOC107687905
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048446.1
NCBI id JAEQBD010000791.1
chromosome length 1202875
location 41070 ~ 47475 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233513.1
atgctcCGATCCCGCTTTCCTCCAAAATCCGAGTCCTCCTCTGTCAGTAAAGTGAACTGCAGCGGATCAGATGTGAGTCACTTTCtctctgacagacagacagacctcAGACAGATCCGTCCGGGTCCGCCGGGAGCCAGACGTCTGGTCCCGACGGGGATTGTGGCCATCTGTTTATCTTTCGGTTTAGAGGCGCTCAAGGAGATGTCCTGCTACAACCACCAGAGAAAAACAGTCTCGTATAATGAAGTCATACCGTGCAGGCGCGTGGCCCAGCAAACGATGCCGTCTCACCACAAAGAGCTCGTGCCTCAGCTGGCCTGGATGGAGGCCAATAAAAGCACGGAGGAGATGAGAGGTCAAGCCCCGGACGGAAAAGCCGCAGCCGTGAGTCCGGAGGTCAGCGCGAAGCAGACGGCCTTCGAGAGAGCCGTCTATGACCTCGGGCACAAGGAGAAGCTCGTCAGCGACCTCGCCTTCGGCAAACGGGTCGGCTTTTACGAGCTCCGTGGGGAAATAGGCAGCGGAAACTTCTCCCAGGTCAAACTCGGCGTTCACGACCTGACCAAAGaaagGGTTGCCGTCAAGATCCTGGACAAGCTGCGTTTGGACAGGCGCTCACAGAGGTTGTTCTCGTCTGAGATACGCTGCATGGAGAGACTGTCCCACCCCAACATTGTTCGTCTGTATGAGGTGGTGGAGACGTTCTGCAGGCTTCACCTGGTGATGGAGTATGCTCCTGGAGGAGAGCTGTACTCCAGGATCGCCACCAGAGGACGCCTGTCCGATCTGGAGAGTAAACTAGTCTTCTCTCAGATACTGTCTGCTGTTAAACACATGCACGACAACAACATCATCCACCGCGACCTGAAGGCCGAAAACGTCTTCTACACCACCACGTACTGCATCAAAGTGGGCGACTTTGGCTTCAGCGCTGAATGCAAGCCTACCGACATCCTCACCACCTTCTGCGGCTCCCCGCCCTACGCCGCCCCTGAGCTCTTCCGGGACAATGGTTACATCGGACCGCCGGTGGACATCTGGGCTCTGGGCGTCCTGCTGTACTTCATGGTGACGGCCACGTTCCCCTTCAACGGCTCGAGTCTGAGACGACTGCGCTTCTGCATCCTCCGGGGATCCTACGTCATCCCCGCGTTCGTGCCAGACGTCTGCCAGTATGTGATTAAAGGCGTGCTGAGGCTGGTCCCGGCCGACCGTATATCCCTGGCGCAGATCATGTCCAGCGCGTGGCTGAGGGGCATCGAGTATCCTCAGCCGTACGCACCCGCTCCTCCCACGCCGGCGCACCTGGCCGACGCGTCACGGACGCTCTCCGCCGAAGAGCGCTCGGTCAAACTCGCCCTCGGGGGGCTGGGGATCACCGAGATTCACCTCAGGAACAACGCGGTGCTGGACTCCCGGAGCCCTCTGACGGGGATCTACCGGATTCTTCTGCACCGGATCCAGCGGAGCAGGTCCGTGGAGTCGGCGGGATGCTCGGCGCTCTGTTCCGCCAATACCCGCCTCGGCAGGAGGTGCTGGTCTCACCCTACGACCGTCCACAGGAAACAAGAACAGTCCGCCGTCTGTGCCATCCTAtaagaaaaacagagacagatgCGCTCGGCTGGGTGGGTCTTTCCCACCCGACCTCGTGGACGCGCGTATAAATAGCACGCCAAATACGAAAACTCGTCATAATAATAGGGAAAATGGACTTTGCAGTGATACACGATTTGAATAGGATCGTATATATACGGCACGCCGACAAATATCGTATCACATTCACGTGAAAACCTTTTCTATGCACGCCAAATAAGTGC

Function

NR:

description
PREDICTED: serine/threonine-protein kinase NIM1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233513.1 True 1823 mRNA 0.58 4 41070 47475

Neighbor

gene id symbol gene type direction distance location
ranbp3b ranbp3b,ranbp3,LOC107750915,LOC107754592,LOC107552724 coding downstream 27647 75122 ~ 93865 (+)
LOC122335699 piezo2,LOC107687923,LOC107750931,LOC107696634,LOC107569629 coding downstream 110728 158203 ~ 236524 (+)
rab12 rab12,LOC107687899,LOC107696134,LOC107750912,LOC107754587 coding downstream 196934 244409 ~ 251892 (+)
ndufv2 ndufv2,LOC107696125,LOC107750909,LOC107569634,LOC107596229,LOC107754586,LOC107687898 coding downstream 424378 471853 ~ 477482 (+)
ankrd12 ankrd12,LOC107750907,LOC107754582,LOC107569631,LOC107696110 coding downstream 433033 480508 ~ 526288 (+)
LOC122335677 NA non-coding upstream 12207 25608 ~ 28863 (+)
G190118 abhd8a,LOC107750932,LOC107575227,LOC107696148,LOC107754588,LOC107596234,LOC107687901 non-coding downstream 89669 137144 ~ 139877 (+)
G190162 NA non-coding downstream 144031 191506 ~ 298831 (+)
G190164 NA non-coding downstream 192005 239480 ~ 242372 (+)
LOC122335680 NA non-coding downstream 216578 264053 ~ 264936 (+)
G190168 NA non-coding downstream 246797 294272 ~ 431788 (+)
LOC122335676 rab8a,LOC107687930,LOC107696202 other upstream 20697 13786 ~ 20373 (+)
G190175 mtcl1,LOC107596231,LOC107569627,LOC107754603,LOC107696625 other downstream 291466 338941 ~ 347154 (+)
sirt6 sirt6,LOC107600234,LOC107696599,LOC107596265,LOC107667852 other downstream 769858 817333 ~ 836678 (+)
rab31 rab31,LOC107667863,LOC107696047,LOC107750901 other downstream 858787 906262 ~ 914067 (+)
chico chico,LOC107558286,LOC107696010,LOC107667856,LOC107600187,LOC107713638 other downstream 960675 1008150 ~ 1022881 (+)

Expression


Co-expression Network