CI01000004_03737431_03794978 (PTPRFB, PTPRF)


Basic Information

Item Value
gene id CI01000004_03737431_03794978
gene name PTPRFB, PTPRF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3737370 ~ 3795450 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03737431_03794978.mRNA
AGATTATTTGGCAAGCTGATTAATGTAAAAAGCTGTTTTCTCCAGAGATCGACAAATCTGGACTTGAAATGATCTCTGGAAATTGGAAGATGTAGAAAAATGGTTGATGTTCTGATCTCATATATCACTACAGAAACCCTTCTGCTCCCTCCATCAAAAGAGATGTCCCCTTTAATTGTTGTCATCCATCACTCTCATACACACCTTTCTGGGAATTACAAGGACATTTGTTTCTCAAGAACTGTTGAGACTTTTACAGAAATACTCAATTGTTTTTAAACAAGCTATTAGTTTAGAAGTTGCCTTACCTGACTAGAAAAATTCAGTGCAAATCATTGAAATCATTTTGTGGTGAACTGTTCCTTTAAACACGTACAGTTAGCATATAGCATGGACGTTACACCAGACTCATTGGATCTAAACATGCGTGATCAGTCTCTGACGAACGGCTTGTTCTCGTTGTGAGTGCCCCATGGTGCTTCATCACTATTTGAGCATCCTCTTCTGTGGCGACGTGTTTGTGCAGGGAATTCTGCTTCTCGTATACCATGACCTCAGTCGCTTGCGTAACCTCTCAGATAAAGAAAACCAGATTCCTCATGGCTTCCCCACCATAGACATGGGCCCTCAGCTGAAAGTGGTGGAGCGAACAAGAACAACCACAATGCTTTGTGCAGCCAGTGGGAACCCTGACCCGGAGATCACTTGGTTCAAGGACTTCCTACCGGTAGACATCAACAGCAACGGGCGAATTAAACAGCTTCGTTCAGGAGCTCTGCAGATTGAAAACAGCGAGGAATCAGACCAGGGCAAGTACGAATGTGTAGCTACGAACAGCGCTGGGACGCGCTACTCGGCCCCCGCCAATCTCTACGTGCGAGGTATAATGGTGTTGGAGGCATTGTCTGTGAAACAGAACTTTGAGAGTGCTGTTGTTATGAGTGTCAACCCCTTCAGCTCTTTCCATGCAGACCTCAATCTGGATCCCTCTTTAATCAGAGACCCTTGTTATCAATCCCACTCCCACTGCTATGCCACCCCTCATCTGTGTTTTCAGGCTGAATGTGCTGTGTCAGTACGACGAGTGCCGCCCCGTTTCTCCATCCCACCTACCAATCATGAGGTTATGCCAGGGGGCAGTGTCAACCTCACCTGTGTGGCGGTAGGTGCCCCCATGCCCTATGTCAAATGGATGGCTGGTGAGGTGGAGCTCACCAAGGATGAGGAGATGCCCGTGGGACGCAATGTCCTGGAGCTCACCAACATCCGTCAGTCGACCAACTACACCTGCGTAGCCATCTCATCTCTTGGAATGATCGAGGCAACCGCTCAAGTTTCAGTCAAAGACCAGATGTCTGGAGCTGTATCAGTGCGGCTGGTCCCACCAGACAACGCCAAGCCCTGCCAGACTTCGTTCCTCGTCATCGTGGCTGCCTCTATTGATTCCACTTTGCACTTCACCAATCAATATGGACTTGGAGAATCTCTCCCAAAGCCTCCTACGTCTCTTATCGTGACGGAAACCACAGCTACGAGCGTTACCCTGACATGGGACTCTGGGAACCCTGAACCTGTGTCTTACTACATTATCCAGTACCGGGCCAAGACCTCAGACACCAACTTCCAAGAAGTAGACGGTGTTGCCACCACACGTTACAGCATTGGTGGTCTCAGCCCTTATTCCGAGTATGAGTTCCGCGTGATGGCGGTCAACAACATCGGCCGTGGGCCACCCAGCGACCCGGTTGAGACGCGGACGGGTGAGCAGGCACCTTCCTCCCCGCCGCTGCACGTCCAGGCACGTATGCTGAGCGCCAGCACCATGTTGGTGCAGTGGGAACCGCCGGAGGAACCTAATGGTCAGATTAGAGGCTATCGCATCTACTACACATCTGACCTGGATGCTCCTCTCAGCGCCTGGCAGAAACACAACACGGACGACAGCCGTCTCACCACAATCTCGAGCCTGACCACCGACATTACCTATAGCCTACGTGTCCTGGGCTTCACATCTGTAGGGGACGGCCCCCCATCTGATGTGTTGCAGGTCAAAACACAGCAAGGAGTTCCTGCTCAGCCATCCAGCTTTGAGGCTGAGGCGGAGCTGGATACTCGGATCCAGCTAACTTGGCTGTGGCCAGTCCAGGACCCCATTATCAAATATGAGCTGCAATATTGGGAGGCTGACTCAGAGAACAAGATCCATGTCACCTTCGACCCTGCCGGCTCATACGCTGTTGAAGGTCTGAAGCCGGACACTCTGTATAAATTCTCCCTGGCGGCCCACTCTGAAGTGGGGCAGGGGGTCTTCACTCAGCCCATCGAAGCCAAGACAGCCCAGTCCACCCCCTCTGCCCCCCCTCAAGACGTGCACCTGACCGGTCTGAGCTCCACCAGCATCAAGGTGAGTTGGGTGGCGCCACCTGCCGCTAGTCGCCATGGTGCTATCGTGCGCTACACAGTCAGCTACCAGGCGGTAAACGGTGAAGACTCGGAGCGCCATGAGGTGAAGGACATCGGAGCGGATGCTTCCAGCTATGTGCTGGATGGGCTGGAGAAGTGGACGGAGTATCAGGTGTGGGTGAGAGCGCACACCGATGTGGGCCCCGGCCCAGAGAGCACAGCTGTGCGTATACGTACCAATGAGGACGTGCCAGGAGCCCCACCTCGGAAAGTTGAAGTGGAGGCTGTGAACTCCACAGCTATTCGTGTGACATGGAAGCCTCCTCTTTCTGGGAAGCAGCACGGCCAGATCAGGGGATACCAGGTCATATACTCCCGCCTGGAGAACGGGGAGCCACGTGGCCAGCCTAATATAATGGATGTCGCTCTACCAGAAGCACAGAGCCTCCAGTCCATAACACCTCCACAAGTCATAACTTGTAAACGTTGTTTAATGTCAAAAGAGCAACTTGAGAAGCCTCTCTCTCATCTGTCTCCCCGGCCTCAGCTGAAAAGCCGGGAAACCAGCAAGCACTTGTTTGTCCGTAGACCTGAAGGGTTAGAAGCTCTCTGGCCCATTATAACTGATCAATGTTTCAGCCTCCATGCTTTCTACTCAACTTATCAGCATGACTTCAGCTCCTCGCCAAGAAAGGAAGGCATGCCCTGGGCAAAGCCAGTGGATTCTCGTGTGCTGTCAGGTACAGTAAGAGAAAGCAATGGTTGTGGGTACTCAGTGTCAGTAAAGTTTGATGTCACCCTAGCTGGCAATGTGATAGAGAGGTCAGTTTTCAGGTTGATAATGAATGCAGCCCAGGTCTGGCCCCTGAGAGCACATTTCACTGACAGTGTAATGACTGCGCTAATGACTTTTAGCATAGAGGCTGTGATCACCGGACTTCTCTCTGAGACCTCTTACTCTGTTACTGTGGCAGCGTACACAACCAAGGGTGATGGGGCGCGCAGCAAAGCCAAAGTCATCACCACCACCGGAGCAGTGCCTGGTAAACCCACGATGATCATCAGCACCACCATCGGCAACACAGCTCTCATCCAGTGGCAGCCTCCTAAGGACATGGTGGGTGAGCTGATTGGCTACCGACTGCGGTACAAGCGCCTGGAGGAAGAAAACTATGAAGTCCGTGAGTTTGCACGCACTGACGACCACCACACCGCCACAGACTTGCACAAGGGTGCCACCTATAGCTTCCACCTGAGCGCCAGGAACCGGGCAGGAGCTGGAGAGGAGTACGTAAAAGAGATCAGCACTCCGGAGGACGTGCCCAGCGGGTTTCCCCTCAACCTGCGCGTCGTGGGTCTGACCACCTCCACCACTAGCCTGTCCTGGAACCCGCCGGCCCTGTCTGAGCGCAACGGCCGCATCACCCAGTACCTAGTGGTGTACCGTGACATCAACAGCAAACAGAACAGCACCAACCGCACCGCTGAAACCCAGATGACCATCCAGGGGCTTCGGCCAGACACCACCTATGATATCCGTGTGCAAGCCTTCACCAGCAAGGGAGGGGGTCCCATAAGCCCTAGTATCCAGAGCAGGACCATGTCTACATCACCTGCATTTGCCACAAGTTTTGGTGTCAAAGCTGTGATGAAAACCTCTGTCCTTCTCACCTGGGAGGTGCCAGAAAATTATAAATCCCAAGTGCCTTTTAAGATCCTTTATAACCAGCAGAGTGTGGAAGTCCAAGGCAACCTCAAGAGGAAGCTGATCACGCGACTGCAGCCAGACACTGATTACTCCTTTGTGCTGATGAGCAGAGGGAACAGTGCTGGTGGTCTGCAGCAACAGGTTTCAATTCGTACCGCACCCGACCTGTTCAAAAGTAAACCTGTCCTGTACACAGCAGACCAGACCAATAATGGTAAACTCACCATCAACCTGCCAAAAGTTCCCACCCCAGCTCCTGTCAGGAGGAGAACAGGGCTGTGCTCCGGAGTGCCTTTTTTGATTGGTAAAAAGATTACCAGAGTGTTGAGGATGAGAAAGTCTTGGAGAAGATTGGCATTTGGAGTAGTGCTGATTGATGTGGGATTTTGTGTCAGACACAGCGCTTCGTTCTCTGGGAAATGGCGGAGCTCTGAAGCACAGAGAGAGTTTTTCTTGGAGCTGATTTTGAAAATGCTTCTCGAATCAGACACTGGCCAAATTAAAGCCTCAGCCCCCAGTCTTATTATGAGCGGCCGTGTGCCACTCTCAAGTTATGCTTGTCCGGACCACCTGACAGCTCATTCGTGGTACTACATTGTGGTTGTGCCCGGGTCTCTTACATCATCTCGTAAGTGGATAAATCCTGACGAGATGGAGCTGGATGAGCTCCTGGAGTCTACTGAGGGAGCTCTGCTTAGGAGACGACGTCACACGGAAAATGTTAGGCCATACATCGCCGCAAAGCTGCTTTCTCTCCCAGAAAGCTTCACCTTGGGTGACGAGAACACGTACAATGGCTTCTACAACCGTCCCCTTTCTAACAACCAAAACTACCAGTGCTTTGTCATGGCTGAACTCAAGGACCAGTACCCTGTTACTGCAAATGAGAAGCAGGAAATGCTAAACACATTAGTGATGTTAACTGCCTTTAACACATCGTACTCAAATTGTGTTAAAGTGCCAGAGGAAGCAGAGTGCTCTCGTTTCATTCAACTCCAAAGCATCTGTAGAAAACGCATTGCACCGTGGTCTACGACGAAAAAACTAGATTTTTGAATCTCTTTGATGGGTGAATTTCACAAAGAAATTTCTGACTCATATTTTATTATACAAAAAA

Function

symbol description
ptprfb Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within sensory neuron axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver and nervous system. Human ortholog(s) of this gene implicated in hyperinsulinism. Orthologous to human PTPRF (protein tyrosine phosphatase receptor type F).
ptprf Enables cell adhesion molecule binding activity and protein tyrosine phosphatase activity. Involved in several processes, including negative regulation of receptor binding activity; peptidyl-tyrosine dephosphorylation; and synaptic membrane adhesion. Located in extracellular exosome. Implicated in hyperinsulinism. Biomarker of obesity.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05695 PTPRF, LAR; receptor-type tyrosine-protein phosphatase F

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03737431_03794978.mRNA True 5228 mRNA 0.51 28 3737370 3795450

Neighbor

gene id symbol gene type direction distance location
CI01000004_03705008_03734116 NA coding downstream 1876 3704143 ~ 3735494 (-)
CI01000004_03681226_03695729 KDM4AB, KDM4A coding downstream 40817 3681108 ~ 3696553 (-)
CI01000004_03612407_03645686 ST3GAL3B coding downstream 89906 3611978 ~ 3647464 (-)
CI01000004_03594612_03595116 NA coding downstream 142229 3594133 ~ 3595141 (-)
CI01000004_03588875_03589130 NA coding downstream 148117 3587976 ~ 3589253 (-)
CI01000004_03802203_03806124 NA coding upstream 5686 3801136 ~ 3807171 (-)
CI01000004_04062573_04103207 NA coding upstream 265747 4061197 ~ 4103361 (-)
CI01000004_04177460_04183900 PBX1A, PBX1B, PBX1 coding upstream 382010 4177460 ~ 4183993 (-)
CI01000004_04241031_04243866 PBX1A coding upstream 444792 4240242 ~ 4244611 (-)
CI01000004_04267237_04294023 NA coding upstream 471276 4266726 ~ 4294110 (-)
G26955 NA non-coding downstream 64215 3672939 ~ 3673155 (-)
G26948 NA non-coding downstream 79501 3657554 ~ 3657869 (-)
G26924 NA non-coding downstream 188675 3548474 ~ 3548695 (-)
G26854 NA non-coding downstream 330543 3406403 ~ 3406827 (-)
G26837 NA non-coding downstream 381898 3355215 ~ 3355472 (-)
G26902 NA non-coding upstream 23733 3819183 ~ 3929949 (-)
G26889 NA non-coding upstream 88915 3884365 ~ 3907456 (-)
G26983 NA non-coding upstream 161294 3956744 ~ 3956954 (-)
G26992 NA non-coding upstream 183156 3978606 ~ 3978816 (-)
G26995 NA non-coding upstream 192793 3988243 ~ 3988560 (-)
G26788 NA other downstream 461649 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1962429 1772928 ~ 1774942 (-)
G27746 NA other upstream 1382777 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 1824933 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 2739377 6538904 ~ 6541252 (-)
G29388 NA other upstream 2835843 6631293 ~ 6631907 (-)
G29656 NA other upstream 4168914 7964364 ~ 7965500 (-)

Expression


Co-expression Network