CI01000004_05781905_05788633 (PALMD)


Basic Information

Item Value
gene id CI01000004_05781905_05788633
gene name PALMD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5781602 ~ 5790006 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05781905_05788633.mRNA
CTATTAAAACCGACAATATCTACAAGGGGTCACCCACTCAGACACGGGCAACCAAATCCTGTCAGGCAGATTATTTATGGTGCATTGCAGAGACTGTTTTACCACTGCTGCTATTCGTGGAAGCACAGTGATCTTTAGAAAGCAAGTGGTGATAAATGGACATTAACTTATGTATCAAAATATCAGTGTCACTGTGTGGAGGTTGACCTACATATCGGCCAACACCCTTTTGAGGCCCCACTAGTATGGATGATGATTTTATAGTGTCATATAAAGGTTAATGTTTTTTTTTCTAGAGGCAGGATGGAGGAAGCAGAACTGTTAAAGGAGCGGCTTCAAGCTATTACGAATAAGAAAAAAATCCAAGAGGAAATTGCCCACAAAAGGCTTGAGATCGACAGAGAGAAACTGAAGCTTCAACATGTTAAGAAAAGGTCCATGAGAGATCTGTGGCTCATGGATGGGATGAACAGCAGTAATGCACAGGAAACACAAAAAGCTCTTGAAGATGCACAACAAACGAAACACCTCAAGAGTAATATACATCGGATAGAGAAAGAAATTGAAGCGTTGGAGAGAGAGGAAATGAACATCTCAACAAATGAGGGGCTGATTCTAAAGAGGCTAAAAGCCATTGAAAAATCTCCAGAGGACATTATTAAGGCAGTGAATGCAGATTTCATTTCAGCTTTGTTTGCTATGGAAATTAACGTTCAGAAGGACTTGCGCACAGGTGAAAGCCAAGTGCTGTCCACCTCCGCCATTTCTCCCCAAGAGCTCCAGCAGAGAGGCATCAAAGTCTACGACGATGGCCGGAAGTCCGTCTATGCCTTACGCACGGACGGCCACCAGCCTGGTGCGAACGGAGTGGATGAACTCAGTCCAGTGGAGGTTGAGGAGCTGTTGAGACAGGCCTCTGAGAAAAAGAAGAGGTCCAATCAGGTTCAAATGGACCCTTCATATCCCTACAACATCCCCCATGAACTACAATCAGACCCCAATAACAGGGAGAGCCACAAATCCAACGGATACCAAGATCCCTACAGCATCGACTTATCTGCATGGCCTGAGCTTGTGTACAATGATGGTGTTCGCTATCCGGAGGACGCGGGTCATAGACTTCCACTCCTTCCAATGCCTGATTATAATGACAGACCAGACGAATACTATCACAACGGCAATGGGAACAACTACAGTCGTGAGTTACATAGAGGGGAAAGACACGCGCATGGACAATATTACAATAAAAGAGAGAACAACCTGGGAACGCGGCATTTGGATTGTGACATCAGAAACCACAGCCCGTGTTCGGCCTTCTCTGAGGACTCCAAAGTCAGCATCCTGAATGCCATGCCATCGGACGAGCCCGTCACCATGATCTTCATGGGCTACCAGAATGCCGAAGACAACAGCCAGAGCTATGAGGGCTCAGTTCGGGCAGAGCTGGTGATTATTGGAGATGGTGAAGATGATGCAAGCAGGAACATCCACCCTGATCAGAGCTCCAATGTCAACAACGCCTTTTCCTACTCTGCTGGACGGAAGGGCAAAAGAGACGGCGCGGAGGACCCGTCAACTGCAGGTACCCGAAAGATTAAAAAAGTCAAGGGGAGACACAAGCCTTGCTGTGCCCTGATGTAGTTTCACTAACACTCTATCAGCTCTTCTATGGTGCAGCTTCTCACCAGACTGGCTTCCCTCACTCTGCATGCTGGACACTGCTGTGGTTTTCAGTTTTTCAGTGTCTTAAACCGCTTTCTGTCCTTCATGTTGACTTTTGCTTATTGTCTGACAATGTTTGTAGAAACACATTGTCATATATGTATAGCTTTAGAGCAGGGGTCTTCAACTGCAGGGGTCCAACAATTATCATATCTCAAATGATTTTTTTGCACAAAAAAAATCTAAGTTAACTAAAAACAAATCTAAGATCTTCTAAATACACTACAGTTTAAAAGTTTTGGTTAAGTACAAGTTTTTAATGCTTTTACGGAAGTCTTTATGCTTACCAAGGCTGCATTTATTTGATCAAAAATACGGTAAAATCAGTAATATTGTGAAATATTTTTACAATTTAAAATAACTGTTTTTCTATCTTTTAAAATGTAATTTATTTCTATGGTGGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATTATTCTGATATGCTAATTTGCTGCTCAAGAAACATTTCGTATTATCAGTGGTGAAAACAGTGCTGCTTAATTTTTTTTTTTTTTTTGGAAACTGGGATGCATTTATTCTCTGATGAATAGAAAGTTCTGAGGAACAGCATTTATTTGAAATAGACATTTTTGTAAGAAAAACAGTCTTTACTGTCACATTTGATAGAGTAAATGCATCTTTGCTGAATAAAATCATTCATTTTTTTTTTTTAAAGTAATAAATATCTTTCTGACTCCAAAGTGTAGGGAATGTCATTGTACCTCCCAAATTACATTTTAATTTCACTTAATACACTTAATATGTGATTCTGAAAATAAATACAGATTATTTTAATGAATTTTCAATGTAAACATAAGTATGTAAATGCATACAGGCTCTGTTATTAATGGTCAAGCTTAACATACCTTTTTGAAATTAAATTTTATACAAAATGTGTCTCTATCCACCAAGGGGTCATTGAAAAAAGGTTGAAGACCCCTGATTTCGAGCTTTACCTCCCTCTAGTGGTGAAAGGGCAGAAATCTCTTTCAAATGAATGCATGACATATGCAATCTCTCCTTTTTCAACTGCCAAACTTTCTAAACTATATTTCTTTTTTTCACACTTTGCATATAATTTCCTCACTGTGCTTTTGCCACTTGCAATAATAAGCATGGCAGCATGCCATCTGCTGTGACATATGAACAGTCATGCTTGCTGTCATGGATTGTTTCTTTTCTGTCATGCATCTTTTCTTTTGCTTTGACATTGTGTGTATGAGAGCGTTGTATGAAAAGAGTGAGAGATGAATCTTTGTA

Function

symbol description
palmd Predicted to be involved in regulation of cell shape. Predicted to be located in dendrite. Predicted to be active in cytoplasm.

NR:

description
LOC559824 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05781905_05788633.mRNA True 3014 mRNA 0.40 6 5781602 5790006

Neighbor

gene id symbol gene type direction distance location
CI01000004_05735852_05752650 PLPPR4, PLPPR4A coding upstream 27591 5735798 ~ 5754011 (+)
CI01000004_05474127_05476501 NA coding upstream 304847 5473079 ~ 5476755 (+)
CI01000004_05459139_05467673 PTBP2B, PTBP2 coding upstream 312745 5459139 ~ 5468857 (+)
CI01000004_05454350_05455993 NA coding upstream 325609 5453841 ~ 5455993 (+)
CI01000004_05397192_05402109 HCCSA.1, RWDD3 coding upstream 379493 5397095 ~ 5402109 (+)
CI01000004_05800602_05802011 NA coding downstream 10596 5800602 ~ 5802087 (+)
CI01000004_05812640_05834517 AGL, AGLA coding downstream 22634 5812640 ~ 5834517 (+)
CI01000004_05837208_05841141 NA coding downstream 47202 5837208 ~ 5841141 (+)
CI01000004_05870493_05877153 OLFML2BB coding downstream 80487 5870493 ~ 5877442 (+)
CI01000004_05920907_05931169 RXRGA, RXRGB, RXRAA coding downstream 130901 5920907 ~ 5931468 (+)
G28136 NA non-coding upstream 59480 5717112 ~ 5722122 (+)
G28023 NA non-coding upstream 136187 5645177 ~ 5645415 (+)
G28020 NA non-coding upstream 139489 5641840 ~ 5642113 (+)
G28018 NA non-coding upstream 141670 5639731 ~ 5639932 (+)
G27924 NA non-coding upstream 199892 5481805 ~ 5581710 (+)
G28178 NA non-coding downstream 56470 5846476 ~ 5846828 (+)
G28148 NA non-coding downstream 91475 5881481 ~ 6018658 (+)
G28159 NA non-coding downstream 155692 5945698 ~ 5947048 (+)
G28154 NA non-coding downstream 161663 5951669 ~ 5953194 (+)
G28213 NA non-coding downstream 232456 6022462 ~ 6022687 (+)
G28165 NA other upstream 48601 5732589 ~ 5733001 (+)
G27805 NA other upstream 407799 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 2229156 3550329 ~ 3553423 (+)
G26245 NA other upstream 2259209 3509017 ~ 3522393 (+)
CI01000004_02745885_02768971 NA other upstream 3022664 2745885 ~ 2769135 (+)
G28302 NA other downstream 680022 6470028 ~ 6502087 (+)
CI01000004_06571261_06572539 SEP15 other downstream 781214 6570771 ~ 6572667 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1864766 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 2643699 8414316 ~ 8439933 (+)
G28859 NA other downstream 2809229 8599235 ~ 8599603 (+)

Expression


Co-expression Network