CI01000004_08573940_08586930


Basic Information

Item Value
gene id CI01000004_08573940_08586930
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8572741 ~ 8587170 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08573940_08586930.mRNA
GTATAAATGTAACTCTTGTGAGTATGCCAGCACATTTCCTTTAGGCTAGCATGAAGAGGCTTTTACCACGACAAATGTTTTATCAGTCAACAGCCTTAGATTTACTTCAAAAAGTGACTTAAACGCACTTGAACAACAGCAAATGCATCTCTTTGGGATAATTCACAGGATCTTCCCCAATGGTTTTGTGTTAGAAATAAAAAATCACGATTAGACATTTTATGTGAATAGGCATGTGCAAAATACATCATTTTATAGGTAGTTGTGATATATGTGTTTGCATTCAAGAAATGTATAACATAACGTAATATTTCACTGCTACTGTCGTGTGAAAAATTGTATATTAGTTATTATTATATAATAGATATATTTATAATTATCTGTATTAATAATTATATAAAATTCTATGAATGTTATTATTTAATAATGCATGTACAGATATGATATGTATATGTTTTATTATTAAATATTAATATTTTTACTGAATATATATGTACTTTACCATTCAAAAGTTTGGGGTCGGTAAGATTTTTAATGTTTCCGAAAGAAGTAACTTATATGCTCACCAAGGCTGCATTTATTTGATCTAAAATACATTAAAAACATTAGAATTACAAAATATTTATTCAATTTAAAAAGAAAAAAAATTCTATTTTAATATATTTTAAAATGTAATTTATTCCTATGATGGAAAAGCTGAATTTTCAGCATCATTACTCCAGACTTCAGTGTCACATGATCCTTCAGAAATCATACTAATATGCTGATTTTCTGCTCAAGAAACATTTCTTATTATTGTCAATGTTGAAAACAGTTGTGCTGCTTAATATTTTTTGTGGAAACCGTGATTTTTTTCCCCCCCAGGAATCTTTGATGAACAGAAAGTAAAAAAAAAAAACAGCATTTATTTGAAACAGGTTTTATAGCAGTATAAGGAAAGCATAGGTAAGCATGACTGTCAAGATTAATGATTGATCACACTGTTGTCATCTCATTTTGTTCACAGCGTTGCTTCACCTTCACTCTGACTGGTCATGTGGAAACATCTGGTAATGATGCTCCTCTGAAAGACAGTGAACATCAGTGAACAGCTGGTTTCTGTGTGACCCCCTTTACTGTAAGACCCAGAGCTTCTTCAGACCTCCTCAGAGTATCAGCCCCATCTCTTGAAGCCCTTTGATCCATAACCAGGCTCCAGGATGAGTGGGCTCTTTGCCAAACTGGACCCACGGCGGATTCAATGGGGGGCCACCTGGTTTGCCTTCCAGTCCCGTGTTCTCCGCACGAAGCCGGTTGAGTCCATGCTGGAGAGCACAGGTGGCACGGGGGCTCACGGCACCAAACTCGCCCGCGTTCTCTCCACTGTGGACCTTGTGTCTCTGGGAGTGGGAAGCTGTGTAGGCACGGGCATGTACGTGGTTTCTGGACTGGTGGCTAAGGAAATGGCGGGTCCTGGGGTCATTGTGTCTTTCATCATCGCTGCCGTGGCCTCCATCCTGTCAGGAGTGTGCTACGCTGAATTTGGTGTGCGCGTGCCTAAAACCACAGGATCGGCCTATACTTACAGCTATGTGACGGTGGGCGAATTTGTGGCTTTTTTCATTGGCTGGAATCTGATTTTGGAGTATCTGATTGGTACAGCAGCAGGAGCCAGTGCACTCAGCAGCATGTTTGACTCGCTGGCCAATCACAGCATCAGTGGCTTCATGATCAACCACATAGGAACACTCAATGGCCTGGGTAAAGGAGAGCAGTCGTATCCGGACTTCTTGGCCCTGGTCATAGCCATCCTGGTCACAGTGATAGTTGCTCTAGGCGTGAAGAATTCTGTCGGGTTCAACAACGTGCTGAATGTCATCAATCTGGTGGTCTGGGTGTTCATAATGATTGCAGGCCTTTTCTTCGTCAGTGTAAGCAACTGGGATGAGGGACGATTCCTGCCTTATGGCTGGTCAGGGGTCATGCAGGGTGCAGCCACTTGCTTCTATGCCTTTATTGGGTTTGACATTATAGCCACCACGGGAGAGGAAGCCAAAAGTCCCAACACATCCATCCCCTATGCCATCACTGCCTCTCTGGTCACCTGCCTCACTGCCTATGTCTCTGTCAGTGTGATCCTCACCCTGATGGTCCCTTACACTGAAATTGACACAGATGCTCCTTTGATGGAAATGTTTTCTCTACATGGCTTCCAAACTGCCAAATACATAGTGGCCATTGGCTCCATTGCAGGACTGACAGTCAGTTTGTTGGGCTCTCTCTTCCCAATGCCAAGAGTCATCTACGCCATGGCAGGAGATGGTTTGCTCTTCAGGTTCCTGGCCCATGTGAGCACATACACAGAGACTCCTGCAGTGGCCTGTGTGGTGTCGGGGTTCCTCTCTGCTCTCTTGGCTTTGCTCGTCAGTCTGAGGGACCTGATCGAGATGATGTCCATTGGCACTCTGCTAGCCTACACGCTAGTGTCAGTGTGTGTGCTACTGCTGCGTTACCAGCCCGAAGGAGACATCCACGGATTCGTCAACTTCCTCTCTGAGCAAAACGCGAAGCGTAAGGAAGGAGTGCTGGCCGAGTGCGAGAAAGAAGCCTGTTCGCCGGTCAGTGAGGGTGATGATTATGGAGGAGTTCCCACAAACACCTGCGGAGCCAAGAACCTGCCGTCTCTGGGAGACAACGAGATGCTGATTGGTAAGCCTGACAAGTCCACCTACACTGCCAGTCACCCCAACTACGGCACCGTGGACATGTCCTCAGGCATTGAGTCAGATGAGACGGACAGCGTGTACCTGCTGAAGCTGAAGAAGCTGCTGGGGCCTCGCTATTACACCATGCGCATTCGGCTTGGCCTGCCGGGCAAGATGGACCGGCCCACTGTGGTTACCGGCCGCACCGTCACTCGCTGCGTCATTCTGCTCTTCATCCTCAACTTCTGCTTCTGCTCCCTCATCATCTTCGGGTCAGCCTCTGCCATGCTTGTAAATGTTTACCTCATGCTCAAGCTCTCCACAATCACATGGATCCGTTTTGGCGTATGGTGCTTTGTGGGTGTTTTGATCTACTTTGGCTATGGCATGTGGAACAGCACCCTCGAGATCACGGCGCGCGAGGAGGAAGCCCACGCTAGCACGTACCAGCGCTACGACATGGGCTTGGACGACAACTTTGCTGTGGATGACGATCTGTACCCTTCTGGAGACAAAGAGCCGTACCAAAGCTGGGGCTCCCATGAGGGCAGTGGTGGGCACCAGAAACCGAAACACCAGGAGCAGAGCGAGCCTCAGACTGACGGCCTGGACAGGGTGGACAACCACAGGACCTCCTCTTCCTCCTCACACAGCAGGGCCAAAAGCAAAGCTGGCAAACCCAGTCCGGGCTTTGAGGCGCTGGTGGTCGACGATGATTTGGACGATCCTTTGGAATGAGAATGTAATCTGAATGTACTTGTCTGCCAACAACTGCAGAACCCTTGGGCTAGGTTGTTATGTCTCTGCAATGAGTTTTTATTTTACTCTTATTCCTTCATTTGCAGCCATTTTCCACTACTGATAGGATAATGAGAACGTTTAGGATGGGATTTAACTTTTAGAAGGCTTTTTTTTTTTTTTTACCAAATAGCACCTAAAAAGTCCAAATATTTCTTTGTTTGTTTGTTTGTTTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08573940_08586930.mRNA True 3662 mRNA 0.46 8 8572741 8587170

Neighbor

gene id symbol gene type direction distance location
CI01000004_08518587_08521540 EIF5A2, EIF5A.L, EIF5A coding upstream 51080 8518462 ~ 8521661 (+)
CI01000004_08507941_08515797 SLC2A2 coding upstream 56433 8507941 ~ 8516308 (+)
CI01000004_08458998_08503889 TNIK, TNIKA coding upstream 68749 8458998 ~ 8503992 (+)
CI01000004_08414451_08436256 NA coding upstream 136478 8414316 ~ 8439933 (+)
CI01000004_08382042_08402126 PLD1A coding upstream 170227 8380472 ~ 8402514 (+)
CI01000004_08618566_08669147 NA coding downstream 31396 8618566 ~ 8669147 (+)
CI01000004_08693419_08703448 PLPPR3A coding downstream 106249 8693419 ~ 8704156 (+)
CI01000004_08730011_08731219 PALM1B coding downstream 142841 8730011 ~ 8732509 (+)
CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding downstream 149005 8736175 ~ 8744387 (+)
CI01000004_08746864_08765484 NA coding downstream 159314 8746484 ~ 8765905 (+)
G28855 NA non-coding upstream 18178 8554232 ~ 8554563 (+)
G28849 NA non-coding upstream 45066 8527445 ~ 8527675 (+)
G28848 NA non-coding upstream 100857 8470745 ~ 8471884 (+)
G28843 NA non-coding upstream 161521 8410726 ~ 8411220 (+)
G28835 NA non-coding upstream 203668 8368861 ~ 8369073 (+)
G28858 NA non-coding downstream 8682 8595852 ~ 8597783 (+)
G28861 NA non-coding downstream 15453 8602623 ~ 8602843 (+)
G28862 NA non-coding downstream 15925 8603095 ~ 8603461 (+)
G28863 NA non-coding downstream 16435 8603605 ~ 8603927 (+)
G28867 NA non-coding downstream 19144 8606314 ~ 8606585 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 916358 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 1998320 6570771 ~ 6572667 (+)
G28302 NA other upstream 2070654 6470028 ~ 6502087 (+)
G28165 NA other upstream 2839740 5732589 ~ 5733001 (+)
G28859 NA other downstream 12065 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 389268 8976254 ~ 8980984 (+)
G30797 NA other downstream 1910206 10497376 ~ 10497788 (+)
G31710 NA other downstream 3050081 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 3077603 11666900 ~ 11667659 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015467 slc7a14a coding NC_007113.7 CM002886.2 25860344 ~ 25990784 (+)