CI01000004_08693419_08703448 (PLPPR3A)


Basic Information

Item Value
gene id CI01000004_08693419_08703448
gene name PLPPR3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8693419 ~ 8704156 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08693419_08703448.mRNA
ATTTTACTCGGCCAAACCCCAAAATGATGTCTCCAAAAGACAAGCCCAAGAAGAAGCCTCCCAAAGACAGCATGACATTGCTGCCATGTTTCTATTTTGTGGAGCTGCCAATAGTGGCATCCTCCATGATTTCTCTTTACTTCTTGGAGCTGACAGACGTATTACAGCCAGCCAAAGTTGGGTTCCGTTGCCATGACCGCACACTGAGCATGCCCTATGTGGAAACAGGAGACGAGCTCATCCCTCTGCTCATGCTGCTCAGCCTGGCCTTTGCTGGCCCTGCAGCGTCTATCATGCTGGGTGAAGCCTTGATGTACTGCATGCAGTCCAAACTGAAGATTCGCTCTGGTTCAGAAGGGAGTATCAATGCAGGAGGCTGCAACTTCAACTCTTTCTTACGCAGAACAGTGCGCTTTGTGGGTGTTCATGTGTTTGGGCTGTGCGCTACTGCATTGGTGACTGACGTTATCCAGCTGGCCACTGGCTATCATGCTCCCTTCTTCCTAACTGTGTGCAAACCCAACTACACACTGCCAGGCGTGGCCTGCGATAAAAACCCCTACATAACCCAGGACATCTGCTCAGGCCGGGACCAGTATGCCATCCTGTCAGCAAGGAAAACTTTCCCCTCCCAACACGCCACTCTGTCTGGGTTTGCAGCCGTCTACATCTCTATGTACTTCAATGCCACTATCTCAGACAGCACCAAGCTATTGAAGCCTGTGTTGGTGTTTGCATTTGCCATAGCAGCAGCCCTGGCAAGTCTGACCCAAATCACCCAGTATCGAAGCCACCCGATTGACGTCTACGTGGGCTTTGTGATTGGAGCTGGCATCGCTGTTTATCTTGCACTATATGCGGTGGGGAACTTTAAGTCCAATGAAGAAGCTTCCCCTAGGCCATTGAAGCAACCACATCCTCCACAAAAAGATCCTCTAAGAGAACTGACACAGCGTGGCCATGACTCTGTGTACCAAAAGGCCCATGCTTCTGAGAGCAACGATGAGCTCTCGGCCCCGCCTCATGTTGCTGGCCTGAACCGTAAAGTGCGTCGAGAGAAAGCCTCAATGGGCAGCCTGAAGAGAGCTAGTGCAGATGTTGAGCTCTTGGCTCCTCGCAGCCCGATGGGGAAGGAGACGATGGTGACCTTCAGTAACACACTTCCCCGTGCTAATACCAACGCTATGGAGGAGCCTGCTCAGCGTCACATGACCTTCCATGTACCGATGGATTCTCAACGTTCTAAACAGCTGGTGTCCGAATGGAAGCAGAAATCAATGGAGATGCGCAGTCTCAGCCTTAGGGACGAGGAGGAGGAGGAGGATGGAGAAACTGCGGAGGGAGTTGGTGGAGTCGAGGAGGAAGCTTCAGAGGAGCTGGGCATGCCGTCTTCCCTTTATCCTACTGTGCAAGCCAACAGGGGAGCAACGACAGCAGCAGGTGGTGCCAGGGTGATGATGCCTCAAAGGCCCGGTGCCCCACAGTTGGTTCATATTCCAGAGGAAGCCACCAGACCACCACCAGTGTCACCTAAAAGCGCCACCACAAGGGCTAAATGGCTGTCCATGACAGAAAAAGGAGGTCCGGTACCAGCTGCCACGCCAGAACCTCCACGGCTGCCCAACCAGCCACGGGTTATGCAGGTTATTGCCATGTCTAAGCAACACGGTCCAGTTACCATCACCACACCAAAGTCCTCTGAAACTGCCTCGTCCTGTGCTACCTCCAGCACTGGCTCAGAGTCTCCGTACTACCGCATCCCATCAGAGCAAGACAGAAGCAGCATTGTCACGGTAGACGCTCACGCTCCTCATCATCCAGTGGTCCGTCTATCTTCAGGCAACGGGAACACCTGGGACTGGAGAAGCACCTCCAATGGCAGCACCGAGGTCCATGAGACTAGTCGGACACTGCCCAGGCAGGAATGTGTGCGTGATTATCGTCCCATGAAAACAGACTCCCTCTGTTCCTCTACCAGCGATCCTGACCCAGGGATCCTGCCTCCGCCACCTCATCCTGACCTACTTTTAGACAGCAGTCTCAGCCGAGATTCCTCACTTCACCGTAACTCCTCGATCTCAGCTAAAGACTGGGAGCCCGGACAGCCTCACCCAGAACCGGACCACTTCTTTAAGAACTTGCAAACAAACAGACAATTTAAAGACTGAGGAGTTTTTTGTTTTTCTTTTTCATTTTGGGAGGACTCTAATGTGAATAATTGTGTTTTCAGTGGATGGCGAGAGAAGACAGCCTTCATGGTTATCTCACATTGAGCATCTGGGGTGGATTAGTGCATTGGAGCACCGAGAGGATCACATAGACTTGAGGAGGCTGTTGAGTGTATATGCACAAACTGTGAGGAAAGATGACCCACAAACTCCCAAAAATGAAATACAAAATCAAGTTGTAATTAATACATGTATTAAGGGTTTCTGCTCTTTTCCATCTTCACAAATTTGCAGTGAAGAAAATGTTGCCTCTTTCAAGATCAAGCTAAGTCCTCATAAGCCATGACAAAACAACCAACCATATTTACATTTTTATTTGAAGTTTCATTCATACACAAGGATTTACATTGTATTGTACAAGAGGAAATCATGTTTCAGCTCTCTAATGACTCACTGAGGACAGATTTATTGTGGGAATAACAGGTAAGAAGTCTCATCGCTTTGCTGTGTATGGAATCAGTTTTAAGTAGGCCTAGTCACTTTCTCCTTTTTATACTAAAATATGAAGTACTCTTGCTTGTTTGTTCGTGTTGCATGTGTGTTTATTTATGTGTCTTTTAGACCTTGGATGGACTGTTACATATCAGCAGGGATGGCCTCTTTCATTTTGCTGCCCAATGTTAATGTTTTTGTAACAAACTTTGAAAA

Function

symbol description
plppr3a Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in central nervous system. Orthologous to human PLPPR3 (phospholipid phosphatase related 3).

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process

KEGG:

id description
K19582 LPPR3_4; lipid phosphate phosphatase-related protein type 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08693419_08703448.mRNA True 2876 mRNA 0.49 7 8693419 8704156

Neighbor

gene id symbol gene type direction distance location
CI01000004_08618566_08669147 NA coding upstream 24272 8618566 ~ 8669147 (+)
CI01000004_08573940_08586930 NA coding upstream 106249 8572741 ~ 8587170 (+)
CI01000004_08518587_08521540 EIF5A2, EIF5A.L, EIF5A coding upstream 171758 8518462 ~ 8521661 (+)
CI01000004_08507941_08515797 SLC2A2 coding upstream 177111 8507941 ~ 8516308 (+)
CI01000004_08458998_08503889 TNIK, TNIKA coding upstream 189427 8458998 ~ 8503992 (+)
CI01000004_08730011_08731219 PALM1B coding downstream 25855 8730011 ~ 8732509 (+)
CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding downstream 32019 8736175 ~ 8744387 (+)
CI01000004_08746864_08765484 NA coding downstream 42328 8746484 ~ 8765905 (+)
CI01000004_08806791_08812203 NA coding downstream 102635 8806791 ~ 8812562 (+)
CI01000004_08823382_08844233 NA coding downstream 118593 8822749 ~ 8844345 (+)
G28909 NA non-coding upstream 10414 8682707 ~ 8683005 (+)
G28905 NA non-coding upstream 19218 8673758 ~ 8674201 (+)
G28904 NA non-coding upstream 19956 8673221 ~ 8673463 (+)
G28872 NA non-coding upstream 76884 8616221 ~ 8616535 (+)
G28867 NA non-coding upstream 86834 8606314 ~ 8606585 (+)
G28933 NA non-coding downstream 157079 8861235 ~ 8861910 (+)
G28947 NA non-coding downstream 178240 8882396 ~ 8882600 (+)
G28955 NA non-coding downstream 191306 8895462 ~ 8896242 (+)
G28959 NA non-coding downstream 202016 8906172 ~ 8906381 (+)
G28968 NA non-coding downstream 218327 8922483 ~ 8922685 (+)
G28859 NA other upstream 93816 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 242192 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1037036 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 2118998 6570771 ~ 6572667 (+)
G28302 NA other upstream 2191332 6470028 ~ 6502087 (+)
CI01000004_08976512_08980033 TTPA other downstream 272282 8976254 ~ 8980984 (+)
G30797 NA other downstream 1793220 10497376 ~ 10497788 (+)
G31710 NA other downstream 2933095 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2960617 11666900 ~ 11667659 (+)
G31865 NA other downstream 3487974 12192130 ~ 12197418 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015471 plppr3a coding NC_007113.7 CM002886.2 26179096 ~ 26209425 (+)