CI01000004_08730011_08731219 (PALM1B)


Basic Information

Item Value
gene id CI01000004_08730011_08731219
gene name PALM1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8730011 ~ 8732509 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08730011_08731219.mRNA
TCAAAGGCATTGAGAGAGAGATGGCTGTTGGACGGAGCGCCATCCAGTGGAGAGGACGAGGCACAGAAACAACTACAAGAGGATGAAGCTAAGACCAAACTACTGGAACAGACCATCCTCAGACTAGAACAGGAGATTGATGAGCTTGAGAGTGGCATCCCATTGAATAAAGGAGATAAACAGGGCAATGAAAATGCACCTGATGGTCCAGTGAAGGCAGTTGAGAATGGCATACAGCAGCCCAGTCCTAATGCAGATCAAAATAGCAAGAAACAGATCACAGGCATTGAGGCAAAGCTGCAGTGCACCAACCCTGATGTAGCCATTGAGAATGCCAGCGCAGAGCATCCGGTCACCATGGTGTTCATGGGCTACAAGAATGTAGAGGATGAGGCTGAGACCAAGAAGGCACTGGGCATAGAGGAGACAGTCAAAGCTGAATTTGTGGTCATTGAGGACGGCGAGAACAAAGGTGGAAACGAAGGGGCCAAAGAGGACCAGGCCCCACCAAACGGTAGTGCCTCCAGTCCTGACAAAGCTCAGGATGAGGCCAAGAAAGAGGAATCGAAAGAAGAGGGCAATTCGAAAGAAAAGCAGCCGTGCAAGTGCTGCACAGTCATGTGAGTGCGACCGCTCACCTTGAAGTTTAGACTCTGGCGGAAAACTGACCCCCTGACCATAGCGCAACAATGAATGAGTATACCCCGTATACTTATAATTAACTTTTGTTGTCTAGTATGTATTTCTTTTTTTATTTTTATTAATATTTTTCTATATTTCTGTCTTGACATTTATATATCTATATATACATATATTTTCATTATGTAATGAAGTCCAGTATTTTACTTGTTGAAGAACAGAAAAATGAGGACCACAACAGACAACAACATAGTTAAAAGAACATCTTTGTGGCCCTCACCCTTATTTTGTTTTTTCAGAAAAATAAGATGAACATCTCAATATATGAACTAGCTATTTATCTCCCATATACATTTGTGTTTCTAAGATATTACTTTATTATTGAGAAGAAATTACTATATTGATATTACAATGTTATGCTTTTAATATATATTTTGAGCCTTTTGTTTTGTTTTAGTTTGTTTGTTTTTTGCCAAATCATCTCAGACCACTGTGAACACTGGTACATAGAGTGTAGTCTTCGTCCACAGCCATACATTCTGCATTACACCTCATAGTAGGCCAATATGTTTGTAAATATGATCCAATTATTTATGACTGTTCATGCCATGATAGAATACATTTAATCATTTTGTTTTTAATAGGCTGCTGTAATTACCCCCAGATCCCGATTATAACCACAGCAGCTGCTTTAACAGTAAATCACGTTTTATAGGCCAAATACTATTTACAAGATAACCCATTTTAAACTCATTATCTTTTCTACATGAAGGATAACATTGTTAGATATAATTGTAATCAATATTCATTTTTGAAAATGTTATAACATTGCAATGCCTCATATTACATATATGTAGTCCATATTGTCAAAATGCATTCTTACTGTATGTAAAATATATCTTATTATCATTTGAAAAAAAAAAAAAAAAAATGCATTGTTTGAAGTTGAGGGTTTTTTGGTGTTAAATGGGTTGCTGTAAGTTGCCCTCAATTTAACAAGAGTCCAAAATGAATGTTTCAATGTTCAGGCAGGTTATTCACAATAATGAATCAATTATTCGTGTTAATTCATGTTAAGTAGTCTGGGGTCTAAAACATGTTTCTCATTCCAAGACCAACAGCTTTGTAAATGTAGTTTTGCTGTCTTTATGATATTTCAATTTAATTAATTATTTCATGTGTTGTGGATATCAGATAATGTCATGAGTTATAGGTGCTTTATTGATATGGCCAATGCCTGTTATGGTCCAAGTGTTTAAAACAGGAACAATGACA

Function

symbol description
palm1b Predicted to act upstream of or within regulation of cell shape. Predicted to be located in membrane. Is expressed in several structures, including cardiovascular system; nervous system; neural rod; trigeminal placode; and yolk syncytial layer. Orthologous to human PALM (paralemmin).

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08730011_08731219.mRNA True 1914 mRNA 0.37 4 8730011 8732509

Neighbor

gene id symbol gene type direction distance location
CI01000004_08693419_08703448 PLPPR3A coding upstream 25855 8693419 ~ 8704156 (+)
CI01000004_08618566_08669147 NA coding upstream 60864 8618566 ~ 8669147 (+)
CI01000004_08573940_08586930 NA coding upstream 142841 8572741 ~ 8587170 (+)
CI01000004_08518587_08521540 EIF5A2, EIF5A.L, EIF5A coding upstream 208350 8518462 ~ 8521661 (+)
CI01000004_08507941_08515797 SLC2A2 coding upstream 213703 8507941 ~ 8516308 (+)
CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding downstream 3666 8736175 ~ 8744387 (+)
CI01000004_08746864_08765484 NA coding downstream 13975 8746484 ~ 8765905 (+)
CI01000004_08806791_08812203 NA coding downstream 74282 8806791 ~ 8812562 (+)
CI01000004_08823382_08844233 NA coding downstream 90240 8822749 ~ 8844345 (+)
CI01000004_08866163_08873681 HECTD3 coding downstream 133525 8866034 ~ 8873796 (+)
G28909 NA non-coding upstream 47006 8682707 ~ 8683005 (+)
G28905 NA non-coding upstream 55810 8673758 ~ 8674201 (+)
G28904 NA non-coding upstream 56548 8673221 ~ 8673463 (+)
G28872 NA non-coding upstream 113476 8616221 ~ 8616535 (+)
G28867 NA non-coding upstream 123426 8606314 ~ 8606585 (+)
G28933 NA non-coding downstream 128726 8861235 ~ 8861910 (+)
G28947 NA non-coding downstream 149887 8882396 ~ 8882600 (+)
G28955 NA non-coding downstream 162953 8895462 ~ 8896242 (+)
G28959 NA non-coding downstream 173663 8906172 ~ 8906381 (+)
G28968 NA non-coding downstream 189974 8922483 ~ 8922685 (+)
G28859 NA other upstream 130408 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 278784 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1073628 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 2155590 6570771 ~ 6572667 (+)
G28302 NA other upstream 2227924 6470028 ~ 6502087 (+)
CI01000004_08976512_08980033 TTPA other downstream 243929 8976254 ~ 8980984 (+)
G30797 NA other downstream 1764867 10497376 ~ 10497788 (+)
G31710 NA other downstream 2904742 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2932264 11666900 ~ 11667659 (+)
G31865 NA other downstream 3459621 12192130 ~ 12197418 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015472 palm1b coding NC_007113.7 CM002886.2 26237322 ~ 26284245 (+)
striped catfish (Pangasianodon hypophthalmus) G232130 LOC108278069 non-coding NC_047608.1 CM018554.1 25275741 ~ 25277971 (-)