CI01000004_08875722_08877149 (GM11353, RPS8A, RPS8)


Basic Information

Item Value
gene id CI01000004_08875722_08877149
gene name GM11353, RPS8A, RPS8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8875722 ~ 8877507 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08875722_08877149.mRNA
GTATCTCAAGGGACAACTGGCACAAACGCCGTAAGACCGGTGGCAAACGCAAGCCCGTCCACAAGAAAAGGAAATATGAGCTCGGGCGACCTCCCGCAAATACCAAGATTGGAGCTCGGCGCATCCACACAATAAGAGTCCGTGGTGGAAACAAGAAATACCGTGCCTTGAGGCTCGACGTGGGCAACTTCTCATGGGGCTCAGAGTGCTGTACCCGCAAGACCAGGATCATCGATGTGGTCTACAACGCCTCTAACAATGAGCTTGTTAGAACCAAGACCCTGGTGAAGAACTGTGTGGTCCTTGTGGACAGCACTCCTTACAGACAGTGGTATGAGTCTCACTACGCCCTCCCGCTTGGCAGGAAGAAGGGAGCCAAGCTGACCCCTGAGGAAGAGGAAATCCTGAACAAGAAGAGGTCGAAAAAGGTCCAAAAGAAGTTTGACACTCGCAGAAAGAACAGCAAAATCAGTCCTCTGTTGGAGGATCAGTTCCTGCAGGGAAAACTTCTTGCCTGCATTGCCTCCAGACCAGGACAGTGTGGCAGGGCCGATGGCTATATTATTGAGGGCAAAGAACTGGAGTTCTACCTGAGGAAGATTAAAGCCAAGAAAGGCAAATAAATGTACAGCTCTCTTTGATACGACCATTAAAGAAAATACCCCAACTCAGCATGTTCCTGTCATTCTCATTTCATGCAATGTTTAGTTGTCCTGTGTATAATTTCTTTGCCAAGAGGGGACTCTGTCCCTTATGTTGCGATAATTGTTTCTGGTGTATGTTGATGTTGAAAGTAAAATGACTCTGATCTTCCATTTACATAACACGTTTTTATTAAAAGGAGGATTGAGAAAGTTAAGCAGCTGGACTTGTACTGCATTAACTGGTTGTAAACTCCTAGAAAAACCACAAGTGTTGAAGTGCTCTTTTAATTTCCTGTATGAAAGTAGTTATTGCAATACTTGTGTACATGTCTTGAAA

Function

symbol description
rps8a Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS8 (ribosomal protein S8).
rps8 A structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in cytosolic ribosome and endoplasmic reticulum. Part of cytosolic small ribosomal subunit.

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K02995 RP-S8e, RPS8; small subunit ribosomal protein S8e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08875722_08877149.mRNA True 981 mRNA 0.45 5 8875722 8877507

Neighbor

gene id symbol gene type direction distance location
CI01000004_08866163_08873681 HECTD3 coding upstream 1926 8866034 ~ 8873796 (+)
CI01000004_08823382_08844233 NA coding upstream 31377 8822749 ~ 8844345 (+)
CI01000004_08806791_08812203 NA coding upstream 63160 8806791 ~ 8812562 (+)
CI01000004_08746864_08765484 NA coding upstream 109817 8746484 ~ 8765905 (+)
CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding upstream 131335 8736175 ~ 8744387 (+)
CI01000004_08947119_08949558 NA coding downstream 69612 8947119 ~ 8949644 (+)
CI01000004_08976512_08980033 TTPA coding downstream 98747 8976254 ~ 8980984 (+)
CI01000004_08987501_08991239 NA coding downstream 109651 8987158 ~ 8991469 (+)
CI01000004_08996083_08997863 NA coding downstream 118576 8996083 ~ 8997863 (+)
CI01000004_09002274_09004879 IMPA1, IMPA1.3 coding downstream 124535 9002042 ~ 9005023 (+)
G28933 NA non-coding upstream 13812 8861235 ~ 8861910 (+)
G28909 NA non-coding upstream 192717 8682707 ~ 8683005 (+)
G28905 NA non-coding upstream 201521 8673758 ~ 8674201 (+)
G28904 NA non-coding upstream 202259 8673221 ~ 8673463 (+)
G28872 NA non-coding upstream 259187 8616221 ~ 8616535 (+)
G28947 NA non-coding downstream 4889 8882396 ~ 8882600 (+)
G28955 NA non-coding downstream 17955 8895462 ~ 8896242 (+)
G28959 NA non-coding downstream 28665 8906172 ~ 8906381 (+)
G28968 NA non-coding downstream 44976 8922483 ~ 8922685 (+)
G28969 NA non-coding downstream 45215 8922722 ~ 8922940 (+)
G28859 NA other upstream 276119 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 424495 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1219339 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 2301301 6570771 ~ 6572667 (+)
G28302 NA other upstream 2373635 6470028 ~ 6502087 (+)
G30797 NA other downstream 1619869 10497376 ~ 10497788 (+)
G31710 NA other downstream 2759744 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2787266 11666900 ~ 11667659 (+)
G31865 NA other downstream 3314623 12192130 ~ 12197418 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005010 LOC104932872 coding CM030140.1 CM030140.1 12156580 ~ 12159972 (-)