CI01000004_08987501_08991239


Basic Information

Item Value
gene id CI01000004_08987501_08991239
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8987158 ~ 8991469 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08987501_08991239.mRNA
TTATTAAAACGCATGTTAAAGCAGTGTAACCTCCACTCTGTGCTGCTCTTTTGTTAAGTATAGTAATTTGGATGACCAATCAGCCATTTCAGCTTTCATATGTGATGTGACTAAGAACAGCAGGATGGAGTGGGATGTGCCTCTACCCTTTCATATGAGTGCTTGAGATTTTCTGGCTTTCAAGCGGACTGTTCTAAAAATAATCCATTTGCTGGTCGAGTTCCATTTTAAGTTCCGGCTCAATTCACCAAGAACAAAAAGGCAGAAGACCTGCTGTTGTACAGGGGTTCGGGGTAGGATTGGGGTGAAAGACACTCTCTTCTTCCCCATTTTGCCTGGAGGGATGGGGGAGCCGAATGCAGAGGTCAAGGTGGTGAACGAAGAAACCGAGGCCAAGCCACAGCTGGCGCATAAGAATGGGAAGAAGGCAGAGGTTGGAGGAGGAACCTCGTTCTTCACCTGGTTCATGGTTTTGGCTCTCCTGGGTGTCTGGACCTCTGTAGCTGTGGTGTATTTTGACCTTGTTGACTATCAAGGTGTAATTGGTAAACTTGTGTCCTATGATGCCGATGGTGATGGTGACTTTGATGTGGAAGACGCTAAAGTACTACTAGGCAAGTGCACTGATTTCAATGAGATTCTTACCAGATTGTTTTGCATGACTGACTTTGGTTCACTTTTGTGCAATGACAAATTAAATCAGACTGATGCATGGCTGACCAAAGATGGCAGCAAAGAAAACTCAGACTCACTTGAGGAAGTCCTCGATATTTTAGCAGAAGAGGGCACTGATTGGTTTCAAGGTTTCTTCACCTTCCTTTATGACGTTATGAGTCCTTTTGAAACGCTAGAGGATGAAGAAACCGAGGCAGCAGCGGAAGATGTTGCTGGCGCGTCACAGACTGAAGGGGTTCAGGGCCAAAAGACATGCGTTATTTTAGGCCTTCAAAACCAATAGTTGTGTTTTCTACCGCAATTGTGACAGAAGCACTTTATTAGAGGAGGACTTGATTCTGTTCCTAACACTTGAAGAAATATTTTGTTGGGAAGATCACCAACAGTGACTTTGGAACCTGTGAACTCTTGAGAAGACGATGTCATTATGAACATTTACACCTTTGAAAATATTGGACTTGTGTAGTTTATGCTTTGTTGCAGATCTTTTGCAACAGCTATTTTCAACTACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08987501_08991239.mRNA True 1188 mRNA 0.44 4 8987158 8991469

Neighbor

gene id symbol gene type direction distance location
CI01000004_08976512_08980033 TTPA coding upstream 6200 8976254 ~ 8980984 (+)
CI01000004_08947119_08949558 NA coding upstream 37514 8947119 ~ 8949644 (+)
CI01000004_08875722_08877149 GM11353, RPS8A, RPS8 coding upstream 109651 8875722 ~ 8877507 (+)
CI01000004_08866163_08873681 HECTD3 coding upstream 113362 8866034 ~ 8873796 (+)
CI01000004_08823382_08844233 NA coding upstream 142813 8822749 ~ 8844345 (+)
CI01000004_08996083_08997863 NA coding downstream 4614 8996083 ~ 8997863 (+)
CI01000004_09002274_09004879 IMPA1, IMPA1.3 coding downstream 10573 9002042 ~ 9005023 (+)
CI01000004_09173580_09175411 NA coding downstream 180283 9171752 ~ 9175657 (+)
CI01000004_09185502_09218621 NA coding downstream 193366 9184835 ~ 9218642 (+)
CI01000004_09224465_09224950 NA coding downstream 231010 9222479 ~ 9224956 (+)
G28992 NA non-coding upstream 3455 8983490 ~ 8983703 (+)
G28989 NA non-coding upstream 13520 8971829 ~ 8973638 (+)
G28929 NA non-coding upstream 16527 8967015 ~ 8970631 (+)
G28976 NA non-coding upstream 47983 8938966 ~ 8939175 (+)
G28975 NA non-coding upstream 48295 8936419 ~ 8938863 (+)
G28994 NA non-coding downstream 26336 9017805 ~ 9021061 (+)
G28999 NA non-coding downstream 32583 9024052 ~ 9024252 (+)
G29010 NA non-coding downstream 49615 9041084 ~ 9042246 (+)
G28980 NA non-coding downstream 217638 9209107 ~ 9211614 (+)
G30120 NA non-coding downstream 305787 9297256 ~ 9297656 (+)
G28859 NA other upstream 387555 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 535931 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1330775 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 2412737 6570771 ~ 6572667 (+)
G30797 NA other downstream 1505907 10497376 ~ 10497788 (+)
G31710 NA other downstream 2645782 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2673304 11666900 ~ 11667659 (+)
G31865 NA other downstream 3200661 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 3651285 12646838 ~ 12652570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location