CI01000004_12810922_12817913 (VWC2L.2)


Basic Information

Item Value
gene id CI01000004_12810922_12817913
gene name VWC2L.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12810572 ~ 12818547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12810922_12817913.mRNA
GCATAAAACGAGCTTAGATCTTAGAAGCAAACATCACAACCATTTTAAACTCTCAATAGACACACAAAGCTGCAATAAAAGGGAATGCCTCATAAAACTACAACCTATCAATATCCTGGTATTTGGCTGTCACGTGTAAATTGAAACATAACCCAGGAGGCGTAAAACTTTCCCTGCGCGCAACTGGCTCCAAAACCGCGCACAGCCTATTCTGACCATGAAAGGCATTTTAAACTTTATCTAGTTTAGTTAAATAGACGTGTGCAATAGCAAGTTATTGAAAATAACATAGCAATTTCTATTTATGGTGCATTTGCAAGTCTTGTTTTGGCACTGAGAAGTTTTCGGTGATGGGCATGGCTGTGCTCTGGGGTTCCCCGGTGAGTTTTCTTCATGTCTGGCTTACCCTGTTGATCTGCGGCCAGTGTGCTTTGGCTTTTTCGGTCGCTGGACAACAAGAGACGACCTGTGAGGCGAACGGCAGTGTTTATTATGTGGGCGAATGGTACTTTTTAGACTCAGATCATTGTACCCAATGCGAATGTACAGCAGACGGGTCTGCTTGCGCGCGGACTGAGTGCACATCCCTGCCTGCCGCCTGCATCCATGTCAGCCATTACCCGACAGACTGCTGCCCGAGATGCGAGAAGATCGGCTGCGAGTACGGCGGAGAAGTCTACGAACTGGGGCAACAGTTTCAGCCCTCCGCATGTGAGCAGTGTACCTGTTACAGCGACGGCATCGCCCGCTGTCAGGTCGCAGACTGTGCCCCTCCGCCATGTGTTAATCCAGTCTATCAGAAAGGAAAATGCTGCCCTCAGTGCAAGGATGGACCCAACTGTTATGTGAATGCCTCTAGGACCCAAGTGATCCCTGGAGGTGAGCCAGTGTGGGTCGACTCCTGTACTAAATGTCGATGTCATGACGGTCAGGATGCAGGTTACTGGGAGGGCAACCGTCTGGCAACGTGTTCCCATGTCCGCAACTGCAAGCCTGATGAAGGGCTAAACTGAGGAAAGAGGTCAAAAATAGGGTCATCTGTCATCCCCATTTATACGATGGATGACAAAAACTCAGCAGATATCTAAACCACACTTCATGATGAAAGTGTCGAGGCTATACAGCCTACAAGCTTTTAATGATTAAAAACAGTGTGTTATTATTCTAATTAACCATTTAACATTCCAGTTGCTAATGTAAATTGAGCGGGTATAATATTGCTTTGACTTACTAAGGGATATTCCCTAATGAACCAGATAATAGAGCTTAGTTTGAGACACCTTTTTGGCATGGTTAAAAATAGAACAGTGAGCATATTACATTGTTTATATGCCTTTTAGTATTTTCATACAGTACAGTTAAAAAAATGTTGACATTGGGGACTGTGTAGTTCACGTTCTTTGTGATCGTGTATATATATATATATATATATATATACGTTCTTTGTGATCGTATATATATATATATATATATATATATATATGATTTGAAGTACTGTGTATGTTTATATCATTTTCTGCTTCAACTGCATGAAAACCAAAGTATGTTCAGACTGCAAGACTTACATTACTGCCATGCAGGCATGGAAACAGCTAATGTAGCACGAAATACAAACAAACTAACCTATCATAAAGAAATCATTTATAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12810922_12817913.mRNA True 1647 mRNA 0.42 3 12810572 12818547

Neighbor

gene id symbol gene type direction distance location
CI01000004_12764916_12775989 SLC6A9 coding upstream 34400 12764916 ~ 12776172 (+)
CI01000004_12719753_12721562 KLF17 coding upstream 88539 12718416 ~ 12722033 (+)
CI01000004_12696326_12707951 NA coding upstream 102576 12694377 ~ 12707996 (+)
CI01000004_12646972_12652534 NA coding upstream 158002 12646838 ~ 12652570 (+)
CI01000004_12625701_12630744 NA coding upstream 179646 12624321 ~ 12630926 (+)
CI01000004_12984968_12997831 KISS1R, KISS1RA, GPR54 coding downstream 166421 12984968 ~ 12998063 (+)
CI01000004_13043279_13051835 NA coding downstream 224690 13043237 ~ 13051964 (+)
CI01000004_13062721_13076100 KIF2C coding downstream 244174 13062721 ~ 13076228 (+)
CI01000004_13197104_13205895 KLHL20 coding downstream 378557 13197104 ~ 13206585 (+)
CI01000004_13211489_13233786 DARS2 coding downstream 392942 13211489 ~ 13234194 (+)
G32414 NA non-coding upstream 497 12809617 ~ 12810075 (+)
G32382 NA non-coding upstream 29087 12704964 ~ 12781485 (+)
G32371 NA non-coding upstream 109662 12700615 ~ 12700910 (+)
G32350 NA non-coding upstream 146760 12663579 ~ 12663812 (+)
G32296 NA non-coding upstream 308691 12501478 ~ 12501881 (+)
G32431 NA non-coding downstream 34415 12852962 ~ 12853804 (+)
G32439 NA non-coding downstream 83990 12902537 ~ 12952107 (+)
G32491 NA non-coding downstream 159423 12977970 ~ 12978178 (+)
G32494 NA non-coding downstream 163882 12982429 ~ 12982669 (+)
G32506 NA non-coding downstream 182900 13001447 ~ 13001761 (+)
G31865 NA other upstream 615425 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 1142913 11666900 ~ 11667659 (+)
G31710 NA other upstream 1168172 11637251 ~ 11642400 (+)
G30797 NA other upstream 2312784 10497376 ~ 10497788 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1205000 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2272697 15091200 ~ 15097173 (+)
G34220 NA other downstream 3120810 15939357 ~ 15939950 (+)
G33815 NA other downstream 3244868 16063415 ~ 16066464 (+)
G34400 NA other downstream 4158781 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015589 zgc:113531 coding NC_007113.7 CM002886.2 33457310 ~ 33466371 (+)