CI01000004_13211489_13233786 (DARS2)


Basic Information

Item Value
gene id CI01000004_13211489_13233786
gene name DARS2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13211489 ~ 13234194 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_13211489_13233786.mRNA
ATGGCAGACAAATACAGATTATTTTTTCTCAGATCAGCCCAGCAGGTGTTGAGGTGTGTGTACAGCAGGAGATCAGTACCTTCTGTCAATCAAATTTACTCCACAAAACCCTCTCTACCTCCAAACTCGTTAGCATGGGCTTATAAGTTCTCCAGAACCTGCTCTACTTACACTTCAGGTCAAAGCAGCTTTTCACAGAGAAGCCACACATGTGGAGAACTGTGCTCCAGTCATGTAGACAAAGAAGTTACTTTATGTGGCTGGATTCAGTACTTGAGGCAAGATCTTTTTGTGATCTTGAGAGACTTCAGTGGATTGGTGCAAATTCTTATCCCACAGGATGAGAAAATGTCCACAGGAGAAATTGAGGTCTGTGCTGAAAGCATGAAAGTGCTGAATACCTGCCGAAAACTGCCGTTTGAGATTAAAGAATTTGTTAAAAAATCAGAATCCCTCCGGATGCAGTATCGCTATCTTGATCTTCGGTCACCCGGGATGCAGTACAATTTAAGACTGAGATCACAAATGGTGATGAAAATGAGGGAGTACCTTTGCAATTTGCATGGATTTGTGGATGTGGAAACACCGACTTTGTTTAAAAGAACACCTGGGGGTGCCAAAGAATTTGTGGTGCCATCTGGAGACCCTGGGAAGTTCTATTCTCTTCCACAGAGCCCACAGCAGTTCAAACAGCTTCTTATGGTGGCTGGCATAGACCGGTACTTTCAGCTCGCTCGCTGCTACAGGGATGAGGGCTCCAAGCCTGACAGACAGCCTGAATTCACACAGGTGGATATTGAGATATCCTTTGTAGACCAGGCTGGAGTCATGAGTTTGATCGAAGGCTTGGTTCAGTACTCCTGGCCAGAGGATAAAGGACAGATTAATGTTCCCTTTCCCTCCATGACTTATGAGGAAGCCATGAGAGACTACGGAGTTGACAAACCAGACACTAGATTTGGGATGAAGCTTGTGGATGTCACCACAGCATTCCAGGAAACGCAAATTGAGTTCATCAAAGATGCACTTCTTGAACCAAGTGGCTGCATTCAGGCTATCTGTGTCCCAGAAGGAATGAAACACCTGAAGGGCAAAGACTTAGAGTTTCTGAAACAAGCAGCCAAGACACAGTATGGTCAGGTCTTGGCTTCATTTGTGTCTGGGAAACCAGCCCGCAGTGTTCTCGAGACTGATGATTGCTCAAGAGTTTGTGTCCTATGCTGTCAATGGAAATTGAATATGGGCCGGTGGAGGAAATGGATGATCATTGCTGTACTTGCGCCGTGTGTCATACAGGAGGTGAGCGTGGCTCCAGTAAGGGCAGATGGTTCTCTGAAATCCCCTCTCAGCCGACTGCTCTCGGACACGGCCAAACAGCAGCTGCTCCAGATGGCCCAGGCCAATGCTGGAGACCTGATCTTCATCACGGCCGGACCCCGGGAGAACGTGCGCCCTCTGCTGGGGAAGCTGAGACTGCAGTGTGCTGAGCTGCTTGAGCGTTACGGCGTGCCTGTTCGTGACCCCTCTGTCTTTCACTTCTTGTGGGTGCTGGACTTTCCGCTTTTCTTACCCAAAGAGGATGATCCAGAGATGCTTGAGTCTGCCCACCATCCCTTTACGGCTCCAGTCCCTGAGGACGCCCATCTGCTGTACACCCAACCCAACAAGGTGCGTGGCCAGCATTACGACTTGGTGCTGAATGGCTGTGAGATTGGAGGAGGTTCAATTCGAATCCACAATGCCTCTCAGCAGCTGTATATCCTGGACAAGATTCTCAAGGAAGACCCATCGCTTCTTTCTCATCTGTTGGAGGCTTTGGACTCTGGGGCCCCTCCTCACGGTGGAATCGCATTAGGGCTGGATCGACTGGTGTCCATCATTGTAGGAGCTCCCAGTATCAGAGATGTCATAGCTTTTCCAAAATCCTTCAGAGGTCACGACCTCATGAGTCACGCTCCAGACTTTGTCTCTGAAGAAGACCTGAAGCCGTATCATATTTCTGTGGTCTGGCCTAGTGCAGATACAGAAGGTCAACAGAACTCAATGTAAGCACTAAAATGGTTAATATGTGTATGTGTCGCCATCTGTGCCCACGCTGGTGATGGACTTAAGAGCAGGATCACTCCCTGTTCTGTGAGAATTGAGCTCCATCTTCAGAGTGAAGGTGATGTCTGTGTACTTTACATCAGGAAATTCTTCTCATCTGCTGCTTGAATAGATCATTCATGTGCTTTCTCATCATATACATACTCTGTAATTAGTGCTTTCAACTGTACATTTTTTTAATTAAATTTGTTTCAGTGAAATCCAGAGAGAACATGGCTGAATATTTCAGTAGGGGGCAGTGTTGTTCCATTCCGTCATTTTACATTGCTTTCCCCCCCTCTCCACATGCCCTGTGGTGAAGTCAGCATGCATCATATCCTACATTTTTCTTCCCACCACCAGACATACCAA

Function

symbol description
dars2 Predicted to enable ATP binding activity; aminoacyl-tRNA ligase activity; and nucleic acid binding activity. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be located in cytoplasm. Orthologous to human DARS2 (aspartyl-tRNA synthetase 2, mitochondrial).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01876 DARS2, aspS; aspartyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_13211489_13233786.mRNA True 2457 mRNA 0.47 16 13211489 13234194

Neighbor

gene id symbol gene type direction distance location
CI01000004_13197104_13205895 KLHL20 coding upstream 4904 13197104 ~ 13206585 (+)
CI01000004_13062721_13076100 KIF2C coding upstream 135261 13062721 ~ 13076228 (+)
CI01000004_13043279_13051835 NA coding upstream 159525 13043237 ~ 13051964 (+)
CI01000004_12984968_12997831 KISS1R, KISS1RA, GPR54 coding upstream 213426 12984968 ~ 12998063 (+)
CI01000004_12810922_12817913 VWC2L.2 coding upstream 392942 12810572 ~ 12818547 (+)
CI01000004_13467845_13475703 NA coding downstream 233651 13467845 ~ 13476204 (+)
CI01000004_13512059_13706090 ASTN1 coding downstream 277865 13512059 ~ 13706090 (+)
CI01000004_13708254_13713625 NA coding downstream 473693 13707887 ~ 13714179 (+)
CI01000004_13785437_13800307 RFWD2.L, RFWD2 coding downstream 550622 13784816 ~ 13800307 (+)
CI01000004_13959453_14004808 TNR coding downstream 725259 13959453 ~ 14004808 (+)
G32595 NA non-coding upstream 17467 13193719 ~ 13194022 (+)
G32594 NA non-coding upstream 18328 13192718 ~ 13193161 (+)
G32592 NA non-coding upstream 28523 13182696 ~ 13182966 (+)
G32591 NA non-coding upstream 33039 13178229 ~ 13178450 (+)
G32588 NA non-coding upstream 39814 13171348 ~ 13171675 (+)
G32894 NA non-coding downstream 22736 13256930 ~ 13257222 (+)
G32926 NA non-coding downstream 95120 13329314 ~ 13329550 (+)
G32927 NA non-coding downstream 96990 13331184 ~ 13331384 (+)
G33029 NA non-coding downstream 306399 13540593 ~ 13543079 (+)
G32961 NA non-coding downstream 406363 13640557 ~ 13666445 (+)
CI01000004_12646972_12652534 NA other upstream 555778 12646838 ~ 12652570 (+)
G31865 NA other upstream 1016342 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 1543830 11666900 ~ 11667659 (+)
G31710 NA other upstream 1569089 11637251 ~ 11642400 (+)
G30797 NA other upstream 2713701 10497376 ~ 10497788 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 789353 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 1857050 15091200 ~ 15097173 (+)
G34220 NA other downstream 2705163 15939357 ~ 15939950 (+)
G33815 NA other downstream 2829221 16063415 ~ 16066464 (+)
G34400 NA other downstream 3743134 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015609 dars2 coding NC_007113.7 CM002886.2 34138376 ~ 34173489 (+)