CI01000004_13959453_14004808 (TNR)


Basic Information

Item Value
gene id CI01000004_13959453_14004808
gene name TNR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13959453 ~ 14004808 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_13959453_14004808.mRNA
ATGTGGGGGTGCACCATGGCAATACAAGGCTCAATAGTGAGCCTTGCTCTACTGTTCTTTGGGATTCAAGCTGTTCCTAACCCCACCAACAAACTAGTGAGGACCACAAGGGTGAGACGACAAGTTCCAGAAGGTGGGGGTCCCCCTAGTAACCTGACCCAGCCCATGATCTTCAATCATGTATACAACATCAATGTACCTCTAGAGTCACTCTGTTCAGTGGACCTAGACACAGTACCAGGCCCAGAGATAAACAAAGGTACAACTGGGAGTGACAAGATGCCGACGGAGTACACAGAAGAGACAGTAGACTCGGACAGCCAGGTGACCTTCACCCATCGCATCAATATCCCTAAGCAGGCCTGTGCTTGTCCTGCGGCTGCCACCATGGAGCAGCTGGCTAACCGCATAGAGATGCTGGAGAGGGAGGTGTCCTTGCTTCGAGCACAGTGTAGCTCCAGCTGCTGCGGAGAGAGCTCTGTTATGGGTCGCTTGGACTTCGTCCCTCAGTGTGGCCATGGCACCTTCAGCATGGAGGTTTGTGGGTGTGTTTGTGAAGAAGGGTGGATTGGCAAGAACTGCTCTGAACCCCGCTGCCCAGATGACTGCTCCGGCCAGGGCATTTGCATCGAAGGCGAGTGTGTATGCGACCGTAACTTTGGCGGTGAGAACTGCTCAGAGCCTCGATGTCCAGGTGATTGCTCTGACAGGGGGTTGTGCATTGATGGTGAGTGTGTTTGCGAGGAAGCCTATGCTGGGGAGGACTGCTCGCAGGGCAGATGTCTGAACGACTGCTCAGATCAAGGAACCTGTGTGAACGGAACCTGCCAGTGCAGATCCGGCTTCCTGGGGGAAGACTGCTCTCTCATCTTCTGTGCTAATAACTGCAGCCAGAAAGGAGTGTGTAAGGATGGTTTCTGTGCCTGTCAAGAGGGATATACAGGAGATGACTGCACTTCAGTATCACCTCCTATGAATCTGCAAGTTCAGGGAGTGTCAGAGAACGCCATTGATCTGCAGTGGGAGGGGCCAGTGTTCCTGACAGACTATCTCATCACTTACGCCCCTACAACCCCTGGTGGAGTCCAACTAGAGATCAGAGTCCCAGGAAACGTTACCAACACCACCATCAAAGGGTTGGAGCCGGGTCTGGAATACAACATCAACGTGTACGCAGTGATCGACAATATCATCAGTGCCCCTATGAACACCTTAGCCTCCACCTATCTCTCGAATCCAGACGGTTTACTCTTCAAATCCATCATGGAGACATCCGTGGAGGTTCAGTGGCAACCCTTAGACTACTTGTTTGATGGTTGGGAAATAAGCTTCATTCCCAAGGACAATGATGGCGGGATGACAGCACAACTACCCAGTACCATCACGTCGTTCCACCAAACAGGGCTGAAGCCTGGAGAAGAATACACTGTCAACCTGGTGGCCTTGAAAGACCAAGGCAGGAGCCTGCCTGTTACTGCAACCGTTATCACACTAATCGATGGCCCAACACAGCTTATTGTACGAGATGTCTCAGACACGGTTGCCTTTGTGGAGTGGAGCCCACCCAAGGCTAAAGTGGACCAGATTATATTGCGGTACGGGCTGGTAGGGGTGGACGGACCAAAGACCACCTTTCGCCTGCAGCCCACTCTGAGCCAATACTCCCTCCAAGTACTGAGGCCTGGATCCACGTATGAAGTATCAGTTTGTGGAGTCCGGAATGGCACTGAGAGTGGAGCCATTTCCACAGAGTTCACGACAGAAATTGATGCACCAAAGAACCTGAGAGTGCTGTCAAAAACGTCCACTAGCCTGGAGCTGGAATGGGACAATAGTGAGGCAGATGTAGAAGGCTACAGTGTGGTCTACAGCACTCTGGCTGGCGATCAGTATGACAAAGTCATTGTCCCGCGCAACGATGGCACCACCACCAAAACTACTCTCAATGATTTACTGCCTGGCACTGAGTATGGCATAGGAATTTCAGCTGTTGTAGGTGCCAACCAAAGCACCCCAGCAACGATGAATGCCAGAACGGGTCTGGATGTCCCCTTGGATTTGACTGTCACAGCCTCCACTGACAACACCATCACGCTGTTGTGGGGTACAGTGCAGGGGCCTATTGACCACTATAGGGTGACCTACACATCCTCCACTGGAGTCACAACAGAGCTTACGGTGCCCAAGGACGTCACCACCACCACACTGACAGGTCTAGAGCCGGGCACAGAGTACACCATTACAGTTGCAGCACAGAGAGGCAGGCAGCAGAGCACTGCAGCCACTATTGATGCCTTCACAGGGTTCCGCCCTATCACGCAGCTCTTCTTCTCTGAAGTCACATCTGATTCATTGACTGTGGCGTGGAGTGCACCGGCACCGCCTGCTGACGCATTCATCTTGAACTACAGTGCTCAGGACTCGAATGATGATTCTGAAATTGCTCTAGATGGGTCCAAAACCAGAATCACCCTCACTGGTCTCCTGCCCTCCAGGCGGTACACTGTTACCTTGGTTACCATGCACGGCAATGTGACCTCAAAGCCAGTAATAGGCTCAGTCACAACAGGAATGGATCCTCCCAGAGACATGACTGTGCTGTACGTCACTGAGGAATCTGTAACCATATCATGGATTCAGCCACTCGCACCCTTTGATTACTACAAAATGTCTTACCAATCACCAAAAGGTAGGATGGACAATGTGGTGATTGACAATGATGTCACCAACTACACCCTAACCAGCCTCCATCCAGCAACAGAGTACGAAATCAAGCTGAACGCAGTGAGAGGAAGCCAAGAGAGCAAGGTCATCACCACTACTGTCTTCACAGCTATGGACATGCCTATGGAGCTCACCGCATTGAATGTCACACCTCAGGGGGCTCTGCTACGTTGGAACCCCCCTGTTTCCAGTGTTGATAACTACGTGCTCACCGTCACCCGTAACCAAGTTACTGCAGACACCTTCTTAGTGGAGGGTAGCAAGCAGGAGTACCAGCTGAGTCAGCTTATTCCCAGCACCACCTACTCAGTGGCCCTTTATGCTACCAAAGGTCCTCTCACCAGTGGCACTGTCATCGCCAACTTTGTCACACCCATGGATGCGCCCCAGAACTTGACAGCTAGTGAGATTAACCATCGAAGTGCCCTCATATCCTGGCAACCACCCATCGCGGACATCGATAACTACATGCTGACTTACAAAGCAGCAGACGGCAGTCGAAAG

Function

symbol description
tnr Predicted to enable signaling receptor binding activity. Acts upstream of or within axon guidance. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in brain; diencephalon; head; optic tectum; and retinal outer plexiform layer. Orthologous to human TNR (tenascin R).

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K06252 TN; tenascin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_13959453_14004808.mRNA True 3228 mRNA 0.52 15 13959453 14004808

Neighbor

gene id symbol gene type direction distance location
CI01000004_13785437_13800307 RFWD2.L, RFWD2 coding upstream 159146 13784816 ~ 13800307 (+)
CI01000004_13708254_13713625 NA coding upstream 245274 13707887 ~ 13714179 (+)
CI01000004_13512059_13706090 ASTN1 coding upstream 253363 13512059 ~ 13706090 (+)
CI01000004_13467845_13475703 NA coding upstream 483249 13467845 ~ 13476204 (+)
CI01000004_13211489_13233786 DARS2 coding upstream 725259 13211489 ~ 13234194 (+)
CI01000004_14036114_14036449 KIAA0040 coding downstream 30585 14035393 ~ 14039142 (+)
CI01000004_14099120_14100390 MRPS14 coding downstream 94086 14098894 ~ 14100622 (+)
CI01000004_14101510_14102532 CACYBP coding downstream 96702 14101510 ~ 14103227 (+)
CI01000004_14104283_14104432 NA coding downstream 99475 14104283 ~ 14104685 (+)
CI01000004_14105873_14111615 PLK3 coding downstream 100663 14105471 ~ 14112705 (+)
G33086 NA non-coding upstream 133246 13825980 ~ 13826207 (+)
G33077 NA non-coding upstream 180385 13778766 ~ 13779068 (+)
G32959 NA non-coding upstream 206600 13651058 ~ 13752853 (+)
G32961 NA non-coding upstream 293008 13640557 ~ 13666445 (+)
G33029 NA non-coding upstream 416374 13540593 ~ 13543079 (+)
G33122 NA non-coding downstream 41776 14046584 ~ 14047484 (+)
G33137 NA non-coding downstream 108181 14112989 ~ 14113488 (+)
G33163 NA non-coding downstream 150683 14155491 ~ 14155762 (+)
G33150 NA non-coding downstream 159411 14164219 ~ 14201867 (+)
CI01000004_12646972_12652534 NA other upstream 1303742 12646838 ~ 12652570 (+)
G31865 NA other upstream 1764306 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 2291794 11666900 ~ 11667659 (+)
G31710 NA other upstream 2317053 11637251 ~ 11642400 (+)
G30797 NA other upstream 3461665 10497376 ~ 10497788 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 1086436 15091200 ~ 15097173 (+)
G34220 NA other downstream 1934549 15939357 ~ 15939950 (+)
G33815 NA other downstream 2058607 16063415 ~ 16066464 (+)
G34400 NA other downstream 2972520 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location