CI01000004_13785437_13800307 (RFWD2.L, RFWD2)


Basic Information

Item Value
gene id CI01000004_13785437_13800307
gene name RFWD2.L, RFWD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13784816 ~ 13800307 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_13785437_13800307.mRNA
TTATATAAACAAACAGTTCGGGTTGCTCCTACACAGTATAGATTACATGAAGTCATAACAGTTACCTGAAACATTGTAGCCGCTGTGTTTTTAACAACATAATGTGCTGCATAAGGACGATGGTGACTACTTCATTGTTCTTGAATGATTTACTTAATCTACGACGGTTAGTTGTCCTGAATAATTTGAGAAACAACCAATGGTTTGGATAGATTGTTTTGATTGATACCTGCAGTTTTCTTCCAAGCCAGTAGGTGCCGCTGAACTCCGAGTCACTCGAACGTTTCATTCGGGGAAGTTCTCGCGTGAACATCCTGCAGACAGTGGATTGAAATTTCTAAAGCTCTCAGAGTTGTCAACAAATCTCTGCGGAGCTGCATATCCACATTAGCATCGAGCTGACCCAATGCAAACCTCTTGCATAGAGAAGAACCGTATCAGCTGTGCTCAAATAAGCGCCTTTCAGTGCTAGGAGTGCGCTTGGAGGAAGTTTCTGGTTCTTTTCTCTTATCTGTGTCGCTTTAGCTAGTTAGCGTATCTACCACAGCCGCCCGGATGCGGTGAAGCCCCGCAGCTTTAGCTTCAGCTCTGGCCTTCCGACGTGCACGATCGGCTTCAAACATGTCAAGCACTCGACAGCAGCAGTCTGGCGGTGCAGCGGGGTCCGTCCCCGGGACGAGCTCTGGGAGTATGAGCAGCAGCGGCGGCGCCGGTGTAGCGAACAGCGGGAGTGGCGGCGCTCAGAACGGGAACAGTTCGGGTAATGGGGTGTCCTCGCGGACTCTGGGCTCGGCAGCCGAGGGACAGAGCGCTCGACTGGGCTCGTCAAGCAGGAAAAGACCCCTGTACAACGGTCTGATCAATCCCTATGAGGACAAGAGTAATGATTTTGTATGCCCTATATGTTTTGAGATGATTGAGGAAGCTCACATGACAAAGTGTGGCCACAGTTTCTGTTATAAATGTATACGACAGAGTTTGGAGGACAGCAACAGGTGCCCGAAATGTAATTATATCATTGACAATGTGGATCAACTTTACCCCAACTTCTTAGTGAATGAACTGATCCTGAAACAAAAACAGAGATCTGAAGAGAAGCGTCTGAAACGAGATCATCCTAATGGAACCAAATGGCAGGTTTTCCAAGACGTCCTTGGCGCAGATCAAGAGAATATGGATTTAGCCAATGTCAACTACATATTAGAGTACCTGTTGCAAAAAAAGAAACAACTGGAGGCGCAACTGGAGCAGTTACAAAAAGAACTGAACTTTTTGGAAGAGGATATCAAACGAGTTGAGGAAATGAGCGGTGTGTACTCAGTGAGTGACATGGACCCCAATTTAGACAGCACTGTACCCCAGTTTGAAGCTCCCTCACCTGCACCCAGCAGTAGCATAATAGACCCCACAGAGTACATTCAGCCCCCTTTTGGTGGAAGCTCACAGGGTAAGAGACAAACATGGTACAACAGCACTCTGGCGTCACGGCGGAAGAGACTGACTGCACACTTTGAGGATCTCGAGCAGTGTTATTTCTCCAATAGGATGTCTCGAATAACAGATGACAGCAGGACTGTTAACCAGCTGGATGATTTCATGGAGTGTCTATCAAAATTTACCCGTTACAACTCTGTGAGGCCTCTGGCCACCCTCTCTTACGCTAGTGACCTCTATAATGGCTCCAGTATTGTGTCCAGCATTGAGTTTGACCGCGACTGTGATTACTTTGCCATTGCCGGTGTCACTAAGAAAATTAAAGTGTTTGAGTACGGCACTGTGATCCAGGATGCTGTGGACATTCATTATCCTGTCAACGAGATGACATGTAACTCTAAAATTAGCTGTATCAGCTGGAGTAGCTACCACAAAAATCTGTTGGCGAGCAGTGACTACGAAGGGACTGTCATTCTTTGGGATGGGTTCACGGGGCAGAGGTCAAAGGTCTACCAGGAGCATGAGAAGCGGTGTTGGAGTGTCGATTTCAACCTTATGGATCCGAAGCTCTTAGCATCAGGATCAGATGACGCAAAAGTCAAGTTGTGGTCCACCAACCTTGACAATTCAGTAGCCAGCATTGAAGCTAAGGCGAATGTATGCTGTGTCAAGTTCAGTCCATCCTCTCGATATCACCTTGCCTTTGGTTGTGCAGACCACTGTGTGCACTACTATGACCTGAGAAACACTAAGCAGCCCATCATGGTTTTCAAAGGCCACAGGAAAGCAGTGTCCTATGCAAAGTTTGTCAATGGAGAAGAAATTGTGTCTGCCTCAACGGACAGCCAGCTGAAACTCTGGAATGTGAACAAGCCTCATTGTTTGCGCTCCTTCAAAGGCCACATCAACGAGAAGAACTTTGTGGGTCTGGCATCTAATGGAGACTATGTAGCATGTGGAAGTGAAAACAACTCGCTGTACTTGTACTACAAGGGGCTCTCCAAGACGCTGCTGACTTTCAAGTTTGACACTGTGAAGAGTGTCCTGGACAAGGACAAGAAGGAGGACGACACCAATGAATTTGTCAGTGCCGTGTGCTGGCGAGCACTACCTGATGGGGAGTCAAATGTGTTGATTGCAGCCAACAGTCAAGGAACAATCAAG

Function

symbol description
rfwd2 E3 ubiquitin-protein ligase RFWD2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_13785437_13800307.mRNA True 2598 mRNA 0.47 18 13784816 13800307

Neighbor

gene id symbol gene type direction distance location
CI01000004_13708254_13713625 NA coding upstream 70637 13707887 ~ 13714179 (+)
CI01000004_13512059_13706090 ASTN1 coding upstream 78726 13512059 ~ 13706090 (+)
CI01000004_13467845_13475703 NA coding upstream 308612 13467845 ~ 13476204 (+)
CI01000004_13211489_13233786 DARS2 coding upstream 550622 13211489 ~ 13234194 (+)
CI01000004_13197104_13205895 KLHL20 coding upstream 578231 13197104 ~ 13206585 (+)
CI01000004_13959453_14004808 TNR coding downstream 159146 13959453 ~ 14004808 (+)
CI01000004_14036114_14036449 KIAA0040 coding downstream 235086 14035393 ~ 14039142 (+)
CI01000004_14099120_14100390 MRPS14 coding downstream 298587 14098894 ~ 14100622 (+)
CI01000004_14101510_14102532 CACYBP coding downstream 301203 14101510 ~ 14103227 (+)
CI01000004_14104283_14104432 NA coding downstream 303976 14104283 ~ 14104685 (+)
G33077 NA non-coding upstream 5748 13778766 ~ 13779068 (+)
G32959 NA non-coding upstream 31963 13651058 ~ 13752853 (+)
G32961 NA non-coding upstream 118371 13640557 ~ 13666445 (+)
G33029 NA non-coding upstream 241737 13540593 ~ 13543079 (+)
G32927 NA non-coding upstream 453432 13331184 ~ 13331384 (+)
G33086 NA non-coding downstream 25673 13825980 ~ 13826207 (+)
G33122 NA non-coding downstream 246277 14046584 ~ 14047484 (+)
G33137 NA non-coding downstream 312682 14112989 ~ 14113488 (+)
G33163 NA non-coding downstream 355184 14155491 ~ 14155762 (+)
CI01000004_12646972_12652534 NA other upstream 1129105 12646838 ~ 12652570 (+)
G31865 NA other upstream 1589669 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 2117157 11666900 ~ 11667659 (+)
G31710 NA other upstream 2142416 11637251 ~ 11642400 (+)
G30797 NA other upstream 3287028 10497376 ~ 10497788 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 1290937 15091200 ~ 15097173 (+)
G34220 NA other downstream 2139050 15939357 ~ 15939950 (+)
G33815 NA other downstream 2263108 16063415 ~ 16066464 (+)
G34400 NA other downstream 3177021 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005045 rfwd2 coding CM030140.1 CM030140.1 13581461 ~ 13601804 (-)