G33077


Basic Information

Item Value
gene id G33077
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 13778766 ~ 13779068 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU37498
CAGATATTTACTAAATTTTCAACCAGTGACAAAACTGTTATTCTATCACTTGGGAGACACAACTAACTTCCACAGGGAGCAAATAATTCCACAGAATAGATATTTGAAAAGATACAGTGAGGGAAGCAGGTGTGCACTGTGTGAACTATAACGTCATTTCCTAGTTAGTCATGGCTGGCTTGGCTTTAAGACTGGATTATTCTGAGTGAGCATCTGACGGCATTTTTTTTTTTATTATTTGCCTTCCTTATGTTCTAGATATACCTCAAAAACACGTCTCAGTGGACTGCTTTGCAGATGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU37498 True 303 lncRNA 0.38 1 13778766 13779068

Neighbor

gene id symbol gene type direction distance location
CI01000004_13708254_13713625 NA coding upstream 64587 13707887 ~ 13714179 (+)
CI01000004_13512059_13706090 ASTN1 coding upstream 72676 13512059 ~ 13706090 (+)
CI01000004_13467845_13475703 NA coding upstream 302562 13467845 ~ 13476204 (+)
CI01000004_13211489_13233786 DARS2 coding upstream 544572 13211489 ~ 13234194 (+)
CI01000004_13197104_13205895 KLHL20 coding upstream 572181 13197104 ~ 13206585 (+)
CI01000004_13785437_13800307 RFWD2.L, RFWD2 coding downstream 5748 13784816 ~ 13800307 (+)
CI01000004_13959453_14004808 TNR coding downstream 180385 13959453 ~ 14004808 (+)
CI01000004_14036114_14036449 KIAA0040 coding downstream 256325 14035393 ~ 14039142 (+)
CI01000004_14099120_14100390 MRPS14 coding downstream 319826 14098894 ~ 14100622 (+)
CI01000004_14101510_14102532 CACYBP coding downstream 322442 14101510 ~ 14103227 (+)
G32959 NA non-coding upstream 25913 13651058 ~ 13752853 (+)
G32961 NA non-coding upstream 112321 13640557 ~ 13666445 (+)
G33029 NA non-coding upstream 235687 13540593 ~ 13543079 (+)
G32927 NA non-coding upstream 447382 13331184 ~ 13331384 (+)
G32926 NA non-coding upstream 449216 13329314 ~ 13329550 (+)
G33086 NA non-coding downstream 46912 13825980 ~ 13826207 (+)
G33122 NA non-coding downstream 267516 14046584 ~ 14047484 (+)
G33137 NA non-coding downstream 333921 14112989 ~ 14113488 (+)
G33163 NA non-coding downstream 376423 14155491 ~ 14155762 (+)
CI01000004_12646972_12652534 NA other upstream 1123055 12646838 ~ 12652570 (+)
G31865 NA other upstream 1583619 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 2111107 11666900 ~ 11667659 (+)
G31710 NA other upstream 2136366 11637251 ~ 11642400 (+)
G30797 NA other upstream 3280978 10497376 ~ 10497788 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 1312176 15091200 ~ 15097173 (+)
G34220 NA other downstream 2160289 15939357 ~ 15939950 (+)
G33815 NA other downstream 2284347 16063415 ~ 16066464 (+)
G34400 NA other downstream 3198260 16971995 ~ 17025976 (+)

Expression


Co-expression Network