CI01000004_15291659_15296777


Basic Information

Item Value
gene id CI01000004_15291659_15296777
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15291659 ~ 15297847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15291659_15296777.mRNA
GAGGTCAGTGAACCTACCAAGGAGGAGAAGGCGGTGGCCAAGTACCTGCGCTTTAACTGTCCCACCAAATCCACCAACATGATAGGGCATCGAGTGGATTACTTTGTCGCATCTAAAGCAGTCGACTGTCTGCTGGATTCAAAGTGGGCCAAAGCAAAGAAGGGGGAGGAAGCTTTGTTCACAACCAGAGAGTCGGTGGTGGACTACTGCAACAGGCTCCTAAAGAAGCAGTTTTTCCACCGAGCCCTGAAAGTGATGAAGAAGAAGCCAGAGAAAGATGACGACAGTCCAGGATCTCCAAAGAAGAAGAAGGATGTGAAAAAGAAGTTCAAGCTGGAACCTCATGAGGACCAACTGTTCTTGGATGGCAGTGAGGTTTATTTTTGGATTTATGATCCAGTCCACTTTAAAACCTTTGCCATGGGATTGATTCTAGTCATTGCCGTCATCGCAGCCACTCTGTTCCCCCTGTGGCCTGCCGAGATGAGAGTCGGCGTGTATTACCTGAGCGTGGCAGCAGGATGCTTCGTCGCCAGCATATTACTTCTGGCTGTTGCTCGTTGCATCTTGTTCCTGATCATCTGGCTGGTGACCGGCGGCCGTCATCACTTCTGGTTCCTACCGAACTTGACAGCCGACGTGGGCTTTATCGACTCTTTCCGGCCCCTCTACACACACGAGTACAAGGGTCCGCGCTCCAGCTCCAAGAAATCCAACGGTGAGAAATCGGACAAGGGCACGGATTCCAGCAAAGCGCAGAAATCAGATAGCGAGGACAAATCGGACAGCGAGAAGAAAGACGGCGAGGAGGAAGAGGATGAAGACGAGAATAAAGAAATGGAGGAAGCGGGCGCAGAGCGTCATCATAAATCTCAATGGCACTTGACCTGTGATTATTTCTTTGTGGAACTCTGGGAGATCTTGCTTGGTTTGGGACGAGAGATGTATTTTTGTGTACATGACACATTATACATTTCTGCAGTCACATTTTGTGACCCTACTGAGAAATACTCCTTGTTAACGGAAATGGAGAAGTTAATAAATCAGAGCAGTATCCTTGACTGTGGTAGGAAGTTATTAAAAACCAAACTCAATTTGAGTCTTATGAGGACGTCTGCATTCAGAAGGGGGAAACTACATCCACATTCGTGCCAAATGATGCGGGATATCGATGCTTTTCTTTTTAATGTACATTCAAATTATGACCAACTTACAGATCGAGTTCAAACGTGTCATGCCGTAGCTCGTACAGTATGTCCTCTAGAGCCAATCACATCCGTGCATCATAGCCTCTGGTTCTCCCGTCTGGTTTTCAAAGTCCGAGGTTGACAAATCGTACTTCCCCAAGCGGCTGTGGTCCAAAATAGTTAAGTTAGTTTGCATTTTAACAGGGCCAAGGTCCAATACTATCTTTCCGTAGGGTTGCATACTATTGGCTAGAGTATTATTTTACATTAGCTGTTTCTTTGACTCATACTGAGGATGATATTTAAGAGAAAAAATACAAATGTATCATTTATATATGGATTCTATAAATCTACCAGAGATGTTCATGCCAGCACTTCGGGTTCAGCATGAACGGTACTCTATTTTATAATGTCAGACATACAGGTTTTTCATTTCACTGCATTTTGTACTAATACTAAAGCCACCAATGTTTTCAATGCTGAAGACTTCAGAAAGATTGTTTCGGGACAGTTTATTGGAATTAAAATGGCAGAAAACATCCTGTTAATCTGTAATGCGTTGACTCTAGTGGTTATCAAATGCGCACAAGACGAGATGCTGCAAAGGTGTTTTTTTTCTATATTAAAAACCCTTGTTAAAAGCATCCCTCAAAATTCATGATCATCTCAAGTTCACAAGGAGCAGGGAAAGCCCTCGTGCCTGAGTGAACGACTCTCTCTTCTTCTTCAAATGTATGAATCTTTAACCACATCTGTAAGTAGATGATCTTGTCAGTCAAACCCCCAGAGGGCTCACATTAGTGTTCCTGTAGAAGTTTTCAATATTCTGTCATTGACTTTGAAGACCTGGATAGACTGGGCATGACACCACATGTGTAACTAAAGACATTTCTTTTTACTTTCTATGGAACTTCACTCACCTTTTTTTCTGTCCCTGTTGTCTTTATGAGAGAGAAAGATGCTGATATCCCTGATGATTTTTTTTTTTTTTTCCAATTGGCAGGAATTTTGATTTGACATTGGGTGTCTGTCATGTAAAGATGTAGGTATATCATTTATAAAAAATTTACAAAAAATTAAAATCATCTTTTTTATGTGGTCAGCATCTTCAACTAATTGTCCGTATTTGGATCAATGTTGAGGATTGTCTTTTTGCAATATCTGGAGAATAATTTGTGTCTGTCAAAACTGTATCTGTATCCTTTCATTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15291659_15296777.mRNA True 2399 mRNA 0.42 8 15291659 15297847

Neighbor

gene id symbol gene type direction distance location
CI01000004_15277204_15286845 SAMD7 coding upstream 4672 15277204 ~ 15286987 (+)
CI01000004_15260416_15262090 APODA.2 coding upstream 29419 15260239 ~ 15262240 (+)
CI01000004_15237719_15253901 COPA coding upstream 37501 15237719 ~ 15254158 (+)
CI01000004_15229290_15233374 PEX19 coding upstream 57062 15228776 ~ 15234597 (+)
CI01000004_15200553_15209521 SLC1A8B coding upstream 81835 15198242 ~ 15209824 (+)
CI01000004_15316323_15317231 NA coding downstream 18100 15315947 ~ 15317342 (+)
CI01000004_15325044_15326740 NA coding downstream 27197 15325044 ~ 15326787 (+)
CI01000004_15400244_15414139 NA coding downstream 102397 15400244 ~ 15414376 (+)
CI01000004_15444403_15453408 SPPL2, SPPL2B coding downstream 146556 15444403 ~ 15454177 (+)
CI01000004_15631508_15632389 NA coding downstream 333583 15631430 ~ 15632403 (+)
G34061 NA non-coding upstream 19754 15271644 ~ 15271905 (+)
G34055 NA non-coding upstream 55276 15236130 ~ 15236383 (+)
G33896 NA non-coding upstream 67745 15223661 ~ 15223914 (+)
G34032 NA non-coding upstream 131599 15106736 ~ 15160060 (+)
G34031 NA non-coding upstream 184960 15106422 ~ 15106699 (+)
G33857 NA non-coding downstream 121414 15419261 ~ 15425806 (+)
G34090 NA non-coding downstream 135321 15433168 ~ 15433373 (+)
G34100 NA non-coding downstream 183416 15481263 ~ 15481530 (+)
G34101 NA non-coding downstream 184073 15481920 ~ 15482315 (+)
G34141 NA non-coding downstream 258008 15555855 ~ 15556213 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 199690 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1254759 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2635948 12646838 ~ 12652570 (+)
G31865 NA other upstream 3096512 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3624000 11666900 ~ 11667659 (+)
G34220 NA other downstream 641510 15939357 ~ 15939950 (+)
G33815 NA other downstream 765568 16063415 ~ 16066464 (+)
G34400 NA other downstream 1679481 16971995 ~ 17025976 (+)

Expression


Co-expression Network